The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|216591.1.peg.1895: Burkholderia cenocepacia J2315

This feature in The SEED Viewer

NCBI Taxonomy Id: 216591

Current Assignment:
Translate Function Assignments


Context on contig Bcep157f02.p2kA148 from base 308832 to 319937 (11106 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1887 309488 308832 657 -              
1888 309932 309543 390 - 54            
1889 310783 310202 582 - 269         HNH endonuclease  
1890 311021 311347 327 + 237     1: 1   hypothetical protein  
1891 311659 311378 282 - 30            
1892 311773 312675 903 + 113     1: 2   COG1801: Uncharacterized conserved protein  
1893 313431 312721 711 - 45            
1894 313485 314123 639 + 53     1: 1   hypothetical protein  
1895 314522 314157 366 - 33          
1896 315485 314688 798 - 165         Antirepressor  
7776 316282 315800 483 - 314            
1897 316527 316270 258 - -13            
1898 317889 316687 1203 - 159     3: 5 3 4   DNA primase (EC 2.7.7.-)  
1899 318162 318350 189 + 272            
1900 318743 318351 393 - 0            
1901 318773 319153 381 + 29            
1902 319359 319937 579 + 205            

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|216591.1.peg.1895 
MNRLKTHRDIPMINETSFYAILPDAPEWDDLPLATDPVSDDNELRTDALRDSFKSFQDGP
SFNLHRSMMTGNATPSMLRDAVRRLSNMLEVSGEVGDYRTEAEIVRTLTNLTMVAQKTIY
E

MD5 = ec632df2f1bffea161adda6c1029ae61


  DNA Sequence

>fig|216591.1.peg.1895 
atgaacagactcaaaactcatagagacattcccatgattaacgaaacatccttttacgcc
atcctccccgacgcgccagaatgggacgacctcccgcttgcaaccgatcctgtatccgat
gacaacgaattgcgtacggacgcgctccgggacagtttcaagagcttccaagacggcccg
tcctttaatctacatcggagcatgatgacgggcaatgcgacgccctcaatgcttcgggac
gccgtgcgccgtctgtctaacatgctcgaagtctccggagaggtgggcgactatcgaaca
gaggcggagattgtgcgaacgctcacgaacctaacaatggtcgcgcagaaaacaatctat
gaataa


  DNA with Flanking Sequence

>fig|216591.1.peg.1895 
ttgcagaagctatgcgcgcatctgaggacttggtagatattcctacagttgccaagacac
tttcaaagataaagccgattggacctatccagcttgcgcgtgcgctgaaagaatgcggaa
ttttccgaaaagaccataaagaaaatctgcctatgcagaagtttgttaatgcggggttct
tcactgtgattccgtcaacttggaccgctccggacggcgcagttaaaacgcattacaaag
tgatggtgacaggcgcaggtttgcagccgctaacggattggtacgtgaagtacatcgaaa
ctctcccgcccacactcagcaagaagcgcaaataatgagaagcgattttacttagactta
atcaaaatccacatgaagaaggcgcagcaagagcaacaaacggaaaagctgcgccgactt
atccagcaacttactagctcggaagtattcgcaataatgcgcacatgttccgaacgcctc
agatagattcacataattagatgaacagactcaaaactcatagagacattcccatgatta
acgaaacatccttttacgccatcctccccgacgcgccagaatgggacgacctcccgcttg
caaccgatcctgtatccgatgacaacgaattgcgtacggacgcgctccgggacagtttca
agagcttccaagacggcccgtcctttaatctacatcggagcatgatgacgggcaatgcga
cgccctcaatgcttcgggacgccgtgcgccgtctgtctaacatgctcgaagtctccggag
aggtgggcgactatcgaacagaggcggagattgtgcgaacgctcacgaacctaacaatgg
tcgcgcagaaaacaatctatgaataaggatgctaaaggcacccttccccgcaaattaatc
taatcgagcaacgacctgtttctgagtgtgttttcatgggcgttacttaccgcacctgtg
ttgatcacgcgaagatactcatcctgatctttcagaatttcgtctcgtaacagtccacgc
tcatgcagtgacacgtagagagcagccgcgtacgcctgacagttaatcgagcgctcagga
ttaaacgcaatgtcagagaatgcgcgataagtcaaaacaatcttggcaagttctggttgc
ctatgcagagcgttgatgtacaaccaatcatagaacgccgtccggggttgaagcggccat
tctttgccataccattgaaatctaatcatcctgccaaattgtgtaaggcgaggatcgcgc
tttgcgtcaattgacttggcattgagaaggtccgtaaatgggcctccgcgctcaaatact
ttgctcgcttgataggcgcactcaagactgtattcccggcgtggcg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value
isoelectric_point 4.47
molecular_weight 13782
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search