The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki] [GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]
|
![]() |
Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1884 | 306336 | 305221 | 1116 | - | ![]() |
FIG00455841: hypothetical protein | ||||||
1885 | 308010 | 306691 | 1320 | - | 354 | ![]() |
FIG00467626: hypothetical protein | |||||
1886 | 308641 | 307976 | 666 | - | -35 | ![]() |
putative TerS | |||||
1887 | 309488 | 308832 | 657 | - | 190 | ![]() |
||||||
1888 | 309932 | 309543 | 390 | - | 54 | ![]() |
||||||
1889 | 310783 | 310202 | 582 | - | 269 | ![]() |
HNH endonuclease | |||||
1890 | 311021 | 311347 | 327 | + | 237 | ![]() |
1: 1 | hypothetical protein | ||||
1891 | 311659 | 311378 | 282 | - | 30 | ![]() |
||||||
1892 | 311773 | 312675 | 903 | + | 113 | ![]() |
1: 2 | COG1801: Uncharacterized conserved protein | ||||
1893 | 313431 | 312721 | 711 | - | 45 | ![]() |
||||||
1894 | 313485 | 314123 | 639 | + | 53 | ![]() |
1: 1 | hypothetical protein | ||||
1895 | 314522 | 314157 | 366 | - | 33 | ![]() |
||||||
1896 | 315485 | 314688 | 798 | - | 165 | ![]() |
Antirepressor | |||||
7776 | 316282 | 315800 | 483 | - | 314 | ![]() |
||||||
1897 | 316527 | 316270 | 258 | - | -13 | ![]() |
Annotation History / View All Related Annotations | Help on Annotations |
Subsystem | Curator | Role |
---|---|---|
CBSS-227321.4.peg.3751 | OlgaV | hypothetical protein |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
GO:0003677 | F:DNA binding | |||
emb|CAR55744.1 | Burkholderia cenocepacia J2315 | EMBL | putative DNA-binding phage protein | |
fig|216591.5.peg.5666 | Burkholderia cenocepacia J2315 | FIG | hypothetical protein | |
gi|198039773 | Burkholderia cenocepacia J2315 | NCBI | putative DNA-binding phage protein | |
gi|206563733 | Burkholderia cenocepacia J2315 | NCBI | putative DNA-binding phage protein | |
kegg|bcj:BCAM1884 | Burkholderia cenocepacia J2315 | KEGG | putative DNA-binding phage protein | |
ref|YP_002234496.1 | Burkholderia cenocepacia J2315 | RefSeq | putative DNA-binding phage protein | |
tr|B4EME8 | TrEMBL | Putative DNA-binding phage protein |
Score | Peg | Function |
---|
Key Link Explains Key |
Value |
---|---|
isoelectric_point | 10.05 |
molecular_weight | 12093 |
PSORT::Cytoplasmic | 8.96 |
PSORT_score::Cytoplasmic | 8.96 |
similar_to_human | no |
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
> Show tool descriptions