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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|216591.1.peg.1889: Burkholderia cenocepacia J2315

This feature in The SEED Viewer

NCBI Taxonomy Id: 216591

Current Assignment: HNH endonuclease
Translate Function Assignments



Context on contig Bcep157f02.p2kA148 from base 305221 to 315485 (10265 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1884 306336 305221 1116 -           FIG00455841: hypothetical protein  
1885 308010 306691 1320 - 354         FIG00467626: hypothetical protein  
1886 308641 307976 666 - -35         putative TerS  
1887 309488 308832 657 - 190            
1888 309932 309543 390 - 54            
1889 310783 310202 582 - 269         HNH endonuclease  
1890 311021 311347 327 + 237     1: 1   hypothetical protein  
1891 311659 311378 282 - 30            
1892 311773 312675 903 + 113     1: 2   COG1801: Uncharacterized conserved protein  
1893 313431 312721 711 - 45            
1894 313485 314123 639 + 53     1: 1   hypothetical protein  
1895 314522 314157 366 - 33            
1896 315485 314688 798 - 165         Antirepressor  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|216591.1.peg.1889 HNH endonuclease
MKTIKPLKPHEAFLRECLDYDPETGILSWKKQRPAHHFKTIRGSKIWHAKFAGKPAGTKQ
GRDDRLQLHFSTIKLDPYVTRVIWLLATGNDPLDMVIDHINGNPDDNRLINLRLATPEQN
VHNSKTYANNKTGYKGVERTPWGFRVTMRTKRVYFNKSYPTLDEAVAARQKLERMHWGQY
SREASNAIAAALA

MD5 = 9ab05baf807b61d5aef5e02a3ac3fd5c


  DNA Sequence

>fig|216591.1.peg.1889 HNH endonuclease
atgaagacaattaaaccactcaagccacacgaagcctttctgcgcgagtgccttgattac
gatccggaaaccggaattctgagttggaaaaagcagcgccccgcacatcactttaagacc
atccggggtagcaagatttggcacgcgaagtttgccggaaagcctgcgggaaccaaacag
ggacgcgacgacaggctacagcttcatttcagcaccatcaaactagatccatacgtgaca
cgcgtgatttggctgttggcaacgggaaacgatccgctcgatatggtaatcgaccatatc
aacggcaatccagatgacaaccgactcatcaatctaaggcttgccacgccagaacagaac
gtccacaacagcaaaacctacgcgaataacaagaccggatacaagggcgtcgagcgcacc
ccttggggattccgcgtgaccatgcggaccaaacgagtctatttcaacaaatcgtatccg
acgctagacgaagccgttgcagcacgtcaaaagctggagcgtatgcattggggccagtac
tcccgcgaagcctctaacgcaatcgcggcagcactcgcataa


  DNA with Flanking Sequence

>fig|216591.1.peg.1889 HNH endonuclease
gaccaaacccggccgtccgggtgccgatacttcgcaggcaggcgggcaaccatcttgccg
cgcttgcgcgacgtgcgaaagaactcaccgagattgaagcgctcgcccaacatcttcacg
acctcgaccgcgaacggctcgccaagctgatccgcgagtgtcgcgaccgtctgcaaaccc
tccgtccgcgcttcggcctgcgccgcttcaattcgtgccgcaagttcttcttgctgtttc
agcagttctgccagtttcgacataggttcctcaatagttaggcactttgtgccatatggc
ctttcttcgagttagcccggaaatccgggttatttcgcgcatacaccgcttattgctcgg
ttatctcgccgcgcattgcgacgcgtgagtagaactttatcagacctcgtatccaacaag
caatacgcctactcccccccataagacgtgagactcaggggcagactatcgcggatcaat
atacaaagacgttaaacactatgaagacaattaaaccactcaagccacacgaagcctttc
tgcgcgagtgccttgattacgatccggaaaccggaattctgagttggaaaaagcagcgcc
ccgcacatcactttaagaccatccggggtagcaagatttggcacgcgaagtttgccggaa
agcctgcgggaaccaaacagggacgcgacgacaggctacagcttcatttcagcaccatca
aactagatccatacgtgacacgcgtgatttggctgttggcaacgggaaacgatccgctcg
atatggtaatcgaccatatcaacggcaatccagatgacaaccgactcatcaatctaaggc
ttgccacgccagaacagaacgtccacaacagcaaaacctacgcgaataacaagaccggat
acaagggcgtcgagcgcaccccttggggattccgcgtgaccatgcggaccaaacgagtct
atttcaacaaatcgtatccgacgctagacgaagccgttgcagcacgtcaaaagctggagc
gtatgcattggggccagtactcccgcgaagcctctaacgcaatcgcggcagcactcgcat
aaatattttcgaacaattccgtaaatatcgtgagaagtatctaatttgatcttgtgcagg
gacaatttgggtctttcccgcactttacctcgctagggtaatttcaaatcgccgcgcttt
cgatgctggcatatggcccgtgattcgaatgccgcaggcacagggcttttcccggtttcc
tccctacccccaagaaatcggcctaattcttaacttgggcgggtctgaccatttgtcgat
ccgcccataatttattctggagcaatccactatggcaacgactcaagtagccgaagcaat
gccggagcctacagaggatgtgaccgccgatcctgtcgcccacaacgcggcgactgaggc
cgagacagccgtaccgcctgccccggacctcgaatccgcaaacgaacccgctccctccgt
gacaagtacgtttgcctgcgtccatccgacaatcagtctccgcaccgctacggacaagct
caacggtgccgagccaattatc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003676       F:nucleic acid binding
GO:0004519       F:endonuclease activity
emb|CAR55745.1 Burkholderia cenocepacia J2315 EMBL   putative phage-related endonuclease
gi|198039774 Burkholderia cenocepacia J2315 NCBI   putative phage-related endonuclease
gi|206563734 Burkholderia cenocepacia J2315 NCBI   putative phage-related endonuclease
kegg|bcj:BCAM1885 Burkholderia cenocepacia J2315 KEGG   putative phage-related endonuclease
ref|YP_002234497.1 Burkholderia cenocepacia J2315 RefSeq   putative phage-related endonuclease
tr|B4EME9   TrEMBL   Putative phage-related endonuclease


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

Help on Attributes

Key
Link Explains Key
Value
isoelectric_point 10.52
molecular_weight 22209
PSORT::unknown unknown
similar_to_human no


  Protein Families

No protein families found

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