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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|208435.3.peg.563: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
Translate Function Assignments


Context on contig NC_004116 from base 563950 to 575393 (11444 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
551 563950 564699 750 +           Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 2 3 1   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370
563 569396 570715 1320 + 580         Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) locus|SAG0567, protein_id|NP_687596.1, gi|22536745, geneID|1013371
564 570841 571044 204 + 125         hypothetical protein locus|SAG0568, protein_id|NP_687597.1, gi|22536746, geneID|1013372
565 571223 571510 288 + 178         Phage Holliday junction resolvase locus|SAG0569, protein_id|NP_687598.1, gi|22536747, geneID|1013373
566 571701 571847 147 + 190         hypothetical protein locus|SAG0570, protein_id|NP_687599.1, gi|22536748, geneID|1013374
567 571844 572161 318 + -4         hypothetical phage protein  
568 572165 572296 132 + 3         hypothetical protein locus|SAG0571, protein_id|NP_687600.1, gi|22536749, geneID|1013375
569 572296 572712 417 + -1         conserved hypothetical protein - phage associated locus|SAG0572, protein_id|NP_687601.1, gi|22536750, geneID|1013376
570 572709 572873 165 + -4         hypothetical protein locus|SAG0573, protein_id|NP_687602.1, gi|22536751, geneID|1013377
571 572870 573139 270 + -4         Phage protein locus|SAG0574, protein_id|NP_687603.1, gi|22536752, geneID|1013378
572 573142 573474 333 + 2         hypothetical protein locus|SAG0575, protein_id|NP_687604.1, gi|22536753, geneID|1013379
573 573557 573688 132 + 82         hypothetical protein locus|SAG0576, protein_id|NP_687605.1, gi|22536754, geneID|1013380
574 573781 574314 534 + 92         Phage protein locus|SAG0577, protein_id|NP_687606.1, gi|22536755, geneID|1013381
575 574311 574577 267 + -4         hypothetical protein locus|SAG0578, protein_id|NP_687607.1, gi|22536756, geneID|1013382
576 574965 575393 429 + 387         FIG021474: Phage protein locus|SAG0579, protein_id|NP_687608.1, gi|22536757, geneID|1013383

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|208435.3.peg.563 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
MIAQKAINIFEKVQVFQRKIYLSTKADNKRKFGVLYDKVYRKDILKVAWFYVKRNKGSAG
IDDFTIEEIEAYGVQKFLDEIEDQLRNKKYQPKAVKRVYIPKANGKKRPLGIPTVRDRVV
QTAVKIVIEPIFEADFQEFSYGFRPKRSANQAIREIYKYLNYGCEWVIDADLKGYFDTIP
HDKLLLLVKERVTDKSIIKLLSLWLEAGIMEDNQVRSNILGTPQGGVISPLLANIYLNAL
DRYWKNNRLEGRGHDAHLIRYADDFVILCSNNPKKYYQYAKQRIDKLGLTLNEEKTRIVH
ATEGFDFLGYTLRKSKSHKSGKYKTYYYPSRKSMKSIKGKVKDVIQTGQHLNLPDVMERL
NPMLRGWANYFKAGNSKQHFKSIDNYVIYNLTIMLRKKHKKSGKGWREHPPSWYYNYFGL
VCLRKLSTNINDDSQRYGR

MD5 = b4c5f61d676511e07f95fdd4b372d103


  DNA Sequence

>fig|208435.3.peg.563 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
atgattgctcagaaagctataaacatctttgaaaaggttcaagtatttcaacggaagata
tatctatcgaccaaggcagataataagcgaaagtttggtgttttatacgacaaagtatat
cgtaaagatatcctgaaagttgcgtggttctatgtaaaaaggaataaaggttcggcaggc
attgatgacttcacgattgaagaaattgaagcctacggtgtacagaaatttcttgatgaa
atagaagaccagttgagaaacaagaaatatcaacctaaggcagtaaagcgagtttatatt
ccaaaagcgaatggtaaaaagagaccgttgggaattccgacagtccgagatagagttgtt
caaacagctgtgaaaatagttatagaaccgatattcgaagcggactttcaagaattttct
tatggttttagacctaagcgaagtgctaaccaagctataagagagatatataaatatctc
aattatggttgtgagtgggttattgatgccgacttaaaaggttactttgacacgatacct
catgataagttactacttttagttaaggaacgagtaactgataagtctattatcaagtta
cttagtttatggctagaagcaggtatcatggaagacaatcaagtgagaagtaatatttta
ggtactccacaaggaggtgtcatatcaccgttgttagcgaatatctacctaaatgcttta
gacagatattggaagaacaatcggttagaaggaagagggcatgatgcccacttgatacgt
tatgcggatgactttgttattctatgctcaaataatccgaagaaatattatcagtatgcg
aaacagcgtattgataagctaggattaacattgaacgaagaaaagacaagaattgtgcat
gcgacagagggatttgattttctaggctatacgcttaggaaatcaaaatctcacaaaagt
ggtaagtataaaacctactactatccttcaagaaaatctatgaaatcaataaaaggcaaa
gtaaaagatgttatccaaacaggacaacacctgaaccttcctgatgtcatggaaagattg
aatccaatgttgagaggatgggctaattatttcaaagctgggaactctaagcaacacttc
aagagtatagataactatgtcatatataatctaacaattatgcttagaaagaagcacaag
aagtctggaaagggatggagggaacatccgccgtcatggtactataactactttggactg
gtttgtttaaggaagttgagtaccaatatcaatgatgatagtcagagatatggtagataa


  DNA with Flanking Sequence

>fig|208435.3.peg.563 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
atacgtatgcggagtaatccaaatgcggaagcaatgccgactaacgttatccccagtagg
ctgatattcattggtcttatctcagtccgtgggagcgagcaaacctacagtccgtaacga
aagtgaacttccgctaagtgtcgttaaggtcattccaatgagtataactgagagagttgg
aaatagagttgtcgagcctttagaatgggggcgaagactggaattgttgtcagttctaac
tggtatatactggcaataaagctctcggcatatagaagatggaatgtaggtaaagatgag
cgaggaacgaaagagacccttttctatcatacatatcccatgtatgtaaggttagatata
aggaaaacaccgaagttctaattgacgtaggaatagggagtcggagaggttcatagtacc
gataatcatacgagacaacaaaactcgatgtagagaaggagccttgcctttatcggtctt
accgatgaaagaggaactagatgattgctcagaaagctataaacatctttgaaaaggttc
aagtatttcaacggaagatatatctatcgaccaaggcagataataagcgaaagtttggtg
ttttatacgacaaagtatatcgtaaagatatcctgaaagttgcgtggttctatgtaaaaa
ggaataaaggttcggcaggcattgatgacttcacgattgaagaaattgaagcctacggtg
tacagaaatttcttgatgaaatagaagaccagttgagaaacaagaaatatcaacctaagg
cagtaaagcgagtttatattccaaaagcgaatggtaaaaagagaccgttgggaattccga
cagtccgagatagagttgttcaaacagctgtgaaaatagttatagaaccgatattcgaag
cggactttcaagaattttcttatggttttagacctaagcgaagtgctaaccaagctataa
gagagatatataaatatctcaattatggttgtgagtgggttattgatgccgacttaaaag
gttactttgacacgatacctcatgataagttactacttttagttaaggaacgagtaactg
ataagtctattatcaagttacttagtttatggctagaagcaggtatcatggaagacaatc
aagtgagaagtaatattttaggtactccacaaggaggtgtcatatcaccgttgttagcga
atatctacctaaatgctttagacagatattggaagaacaatcggttagaaggaagagggc
atgatgcccacttgatacgttatgcggatgactttgttattctatgctcaaataatccga
agaaatattatcagtatgcgaaacagcgtattgataagctaggattaacattgaacgaag
aaaagacaagaattgtgcatgcgacagagggatttgattttctaggctatacgcttagga
aatcaaaatctcacaaaagtggtaagtataaaacctactactatccttcaagaaaatcta
tgaaatcaataaaaggcaaagtaaaagatgttatccaaacaggacaacacctgaaccttc
ctgatgtcatggaaagattgaatccaatgttgagaggatgggctaattatttcaaagctg
ggaactctaagcaacacttcaagagtatagataactatgtcatatataatctaacaatta
tgcttagaaagaagcacaagaagtctggaaagggatggagggaacatccgccgtcatggt
actataactactttggactggtttgtttaaggaagttgagtaccaatatcaatgatgata
gtcagagatatggtagataacttgtgaatggctataacgtcgaagaaagaagatattggg
aaagccgtgtaagggaaaaccttacgcacggtttgacgaggggtttctgaggagatggct
caaatcagcgacctactctacaaaaatgacgaagccgaggaaacaaaggatatatgcaat
atatgatgacgacaaatttgtcgacgttggcacaaaagaagagttatcggcacggcttgg
aattaaaaaagcaacaatagaacagtacatgactaaatcatatcaagcgttagctagctc
aaaacgaattgcattgttggtagggattgaagaggaatatgacttttaagacagaatttg
aaataccaatcgaaccaaaacctcaaactagacctaagttcagcaaatttggtacgtacg
aagatccaaagatgaagagatggcgaaaagaggtttctggatggatagaaaaaaattatg
atggaccgtttttcgatgattgcataaaggtagaggtaac


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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