The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|208435.3.peg.562: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: Single-stranded DNA-binding protein
Translate Function Assignments



Context on contig NC_004116 from base 562833 to 574314 (11482 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
549 563639 562833 807 -           hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357
550 563691 563882 192 + 51         prophage LambdaSa1, transcriptional regulator, Cro/CI family locus|SAG0554, protein_id|NP_687583.1, gi|22536732, geneID|1013358
551 563950 564699 750 + 67         Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 1 3 2   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370
563 569396 570715 1320 + 580         Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) locus|SAG0567, protein_id|NP_687596.1, gi|22536745, geneID|1013371
564 570841 571044 204 + 125         hypothetical protein locus|SAG0568, protein_id|NP_687597.1, gi|22536746, geneID|1013372
565 571223 571510 288 + 178         Phage Holliday junction resolvase locus|SAG0569, protein_id|NP_687598.1, gi|22536747, geneID|1013373
566 571701 571847 147 + 190         hypothetical protein locus|SAG0570, protein_id|NP_687599.1, gi|22536748, geneID|1013374
567 571844 572161 318 + -4         hypothetical phage protein  
568 572165 572296 132 + 3         hypothetical protein locus|SAG0571, protein_id|NP_687600.1, gi|22536749, geneID|1013375
569 572296 572712 417 + -1         conserved hypothetical protein - phage associated locus|SAG0572, protein_id|NP_687601.1, gi|22536750, geneID|1013376
570 572709 572873 165 + -4         hypothetical protein locus|SAG0573, protein_id|NP_687602.1, gi|22536751, geneID|1013377
571 572870 573139 270 + -4         Phage protein locus|SAG0574, protein_id|NP_687603.1, gi|22536752, geneID|1013378
572 573142 573474 333 + 2         hypothetical protein locus|SAG0575, protein_id|NP_687604.1, gi|22536753, geneID|1013379
573 573557 573688 132 + 82         hypothetical protein locus|SAG0576, protein_id|NP_687605.1, gi|22536754, geneID|1013380
574 573781 574314 534 + 92         Phage protein locus|SAG0577, protein_id|NP_687606.1, gi|22536755, geneID|1013381

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DNA_repair,_bacterial gjo Single-stranded DNA-binding protein
DNA_repair,_bacterial_UmuCD_system gjo *Single-stranded DNA-binding protein
DNA_repair,_bacterial_RecFOR_pathway gjo Single-stranded DNA-binding protein


  Protein Sequence

>fig|208435.3.peg.562 Single-stranded DNA-binding protein
MINNIVLVGRMTKDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAEN
LANWAKKGALVGITGRIQTRNYENQQGQRIYVTEVVAENFQLLESRNSQQQTNQSGNSSN
SYFGNANKMDISDDDLPF

MD5 = b7f8d66519d9c2d1a47289785c875f59


  DNA Sequence

>fig|208435.3.peg.562 Single-stranded DNA-binding protein
atgattaacaacattgtactagtaggtcgcatgaccaaggatgccgaacttcgttataca
ccaagtaatcaagcggtagctactttttcacttgcagttaatcgtaattttaaaaatcaa
tctggcgaacgtgaggctgattttattaactgtgttatttggcgccaacaagctgaaaac
ttggctaactgggcaaaaaaaggtgctttggttggaattacaggtcgtatccaaacgcgt
aattatgaaaaccaacaaggtcaacgtatctatgtaacagaagttgttgcggaaaatttc
caattattagaaagtcgcaatagccaacaacagactaatcaaagcggcaatagttctaat
tcttattttggcaatgccaacaaaatggatatttcagatgatgacttaccattctga


  DNA with Flanking Sequence

>fig|208435.3.peg.562 Single-stranded DNA-binding protein
atctttttcgcaggacccgacaacaaacacagaaaacggttatatcgatgttgcaacgct
tgtcatgcacacgagcggcgaatgggttgagtacgggcctttaagtgttaaacctacaaa
aaatgatgtacaaggcgctggttcggctatcacttacgcaaaacgctatgcactatcggc
aatttttgggataacaagcgatcaagatgatgacggcaacgaagatagtaaaccaaacaa
ttccaggcaatcgccaaaagctacaactaaaaaaacacaaaagacaggatatcaaacacc
aaaaatcagcaatatccaaatcgagacttacaagtctgatttaaatgatattgcgaaagc
cacaaaccaaaacgttgaagagttaacaaaatggctaaccgatactttaaaagtggggga
actagaaaatttgcatacggaacacattgtttcagcagacgaattaatcaataaactcaa
aaagaaagcaggactaaaaaatgattaacaacattgtactagtaggtcgcatgaccaagg
atgccgaacttcgttatacaccaagtaatcaagcggtagctactttttcacttgcagtta
atcgtaattttaaaaatcaatctggcgaacgtgaggctgattttattaactgtgttattt
ggcgccaacaagctgaaaacttggctaactgggcaaaaaaaggtgctttggttggaatta
caggtcgtatccaaacgcgtaattatgaaaaccaacaaggtcaacgtatctatgtaacag
aagttgttgcggaaaatttccaattattagaaagtcgcaatagccaacaacagactaatc
aaagcggcaatagttctaattcttattttggcaatgccaacaaaatggatatttcagatg
atgacttaccattctgagtgtttcgctaagcttctctcaatctaacaggtgaaagtcctg
tcctaacaattaaccagttcggttaggtagctatggcatacgtatgcggagtaatccaaa
tgcggaagcaatgccgactaacgttatccccagtaggctgatattcattggtcttatctc
agtccgtgggagcgagcaaacctacagtccgtaacgaaagtgaacttccgctaagtgtcg
ttaaggtcattccaatgagtataactgagagagttggaaatagagttgtcgagcctttag
aatgggggcgaagactggaattgttgtcagttctaactggtatatactggcaataaagct
ctcggcatatagaagatggaatgtaggtaaagatgagcgaggaacgaaagagaccctttt
ctatcatacatatcccatgtatgtaaggttagatataaggaaaacaccgaagttctaatt
gacgtaggaatagggagtcggagaggttcatagtacc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003697       F:single-stranded DNA binding
GO:0006260       P:DNA replication
GO:0006281       P:DNA repair
cmr|SAG_0566 Streptococcus agalactiae 2603V/R     prophage LambdaSa1, single-strand binding protein
fig|208435.1.peg.559 Streptococcus agalactiae 2603V/R FIG   Single-stranded DNA-binding protein
gb|AAM99467.1 Streptococcus agalactiae 2603V/R     prophage LambdaSa1, single-strand binding protein
gb|AE014217_22 Streptococcus agalactiae 2603V/R     prophage LambdaSa1, single-strand binding protein
gi|22533587 Streptococcus agalactiae 2603V/R NCBI   prophage LambdaSa1, single-strand binding protein
gi|22536744 Streptococcus agalactiae 2603V/R NCBI   prophage LambdaSa1, single-strand binding protein
gi|37999690 organism not parsed/found in ncbi nr NCBI   RecName: Full=Single-stranded DNA-binding protein 3; Short=SSB 3; AltName: Full=Helix-destabilizing protein 3
img|637315768 Streptococcus agalactiae 2603V/R IMG   prophage LambdaSa1, single-strand binding protein
kegg|sag:SAG0566 Streptococcus agalactiae 2603 (serotype V) KEGG   prophage LambdaSa1, single-strand binding protein
ref|NP_687595.1 Streptococcus agalactiae 2603V/R RefSeq   prophage LambdaSa1, single-strand binding protein
sp|Q8E0Z9 Streptococcus agalactiae serotype V SwissProt   RecName: Full=Single-stranded DNA-binding protein 3; Short=SSB 3; AltName: Full=Helix-destabilizing protein 3
sp|SSB3_STRA5 organism not parsed/found in ncbi nr SwissProt   RecName: Full=Single-stranded DNA-binding protein 3; Short=SSB 3; AltName: Full=Helix-destabilizing protein 3


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search