The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|208435.3.peg.561: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: Phage single-strand DNA binding protein
Translate Function Assignments



Context on contig NC_004116 from base 562662 to 573474 (10813 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
548 562662 562850 189 +           hypothetical protein locus|SAG0552, protein_id|NP_687581.1, gi|22536730, geneID|1013356
549 563639 562833 807 - -18         hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357
550 563691 563882 192 + 51         prophage LambdaSa1, transcriptional regulator, Cro/CI family locus|SAG0554, protein_id|NP_687583.1, gi|22536732, geneID|1013358
551 563950 564699 750 + 67         Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 1 3 2   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370
563 569396 570715 1320 + 580         Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) locus|SAG0567, protein_id|NP_687596.1, gi|22536745, geneID|1013371
564 570841 571044 204 + 125         hypothetical protein locus|SAG0568, protein_id|NP_687597.1, gi|22536746, geneID|1013372
565 571223 571510 288 + 178         Phage Holliday junction resolvase locus|SAG0569, protein_id|NP_687598.1, gi|22536747, geneID|1013373
566 571701 571847 147 + 190         hypothetical protein locus|SAG0570, protein_id|NP_687599.1, gi|22536748, geneID|1013374
567 571844 572161 318 + -4         hypothetical phage protein  
568 572165 572296 132 + 3         hypothetical protein locus|SAG0571, protein_id|NP_687600.1, gi|22536749, geneID|1013375
569 572296 572712 417 + -1         conserved hypothetical protein - phage associated locus|SAG0572, protein_id|NP_687601.1, gi|22536750, geneID|1013376
570 572709 572873 165 + -4         hypothetical protein locus|SAG0573, protein_id|NP_687602.1, gi|22536751, geneID|1013377
571 572870 573139 270 + -4         Phage protein locus|SAG0574, protein_id|NP_687603.1, gi|22536752, geneID|1013378
572 573142 573474 333 + 2         hypothetical protein locus|SAG0575, protein_id|NP_687604.1, gi|22536753, geneID|1013379

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|208435.3.peg.561 Phage single-strand DNA binding protein
MRKSESITEYAKAFCKAQLEVKQPLKDKDNPFFKSKYVPLENVTEAITTAFANNGISFSQ
DPTTNTENGYIDVATLVMHTSGEWVEYGPLSVKPTKNDVQGAGSAITYAKRYALSAIFGI
TSDQDDDGNEDSKPNNSRQSPKATTKKTQKTGYQTPKISNIQIETYKSDLNDIAKATNQN
VEELTKWLTDTLKVGELENLHTEHIVSADELINKLKKKAGLKND

MD5 = 78e8c1047a4f3a6e1c4bce9e27de42d9


  DNA Sequence

>fig|208435.3.peg.561 Phage single-strand DNA binding protein
atgaggaaatcagaaagtataacagaatatgctaaagccttttgtaaagctcagctagag
gtaaaacaaccactaaaagataaggataacccatttttcaaaagcaaatacgtgccgctt
gaaaatgttacagaagcaatcacaacagcttttgccaataacgggatatctttttcgcag
gacccgacaacaaacacagaaaacggttatatcgatgttgcaacgcttgtcatgcacacg
agcggcgaatgggttgagtacgggcctttaagtgttaaacctacaaaaaatgatgtacaa
ggcgctggttcggctatcacttacgcaaaacgctatgcactatcggcaatttttgggata
acaagcgatcaagatgatgacggcaacgaagatagtaaaccaaacaattccaggcaatcg
ccaaaagctacaactaaaaaaacacaaaagacaggatatcaaacaccaaaaatcagcaat
atccaaatcgagacttacaagtctgatttaaatgatattgcgaaagccacaaaccaaaac
gttgaagagttaacaaaatggctaaccgatactttaaaagtgggggaactagaaaatttg
catacggaacacattgtttcagcagacgaattaatcaataaactcaaaaagaaagcagga
ctaaaaaatgattaa


  DNA with Flanking Sequence

>fig|208435.3.peg.561 Phage single-strand DNA binding protein
cagaaagaggaaatgatatggcttatttatacgaattagaaggtatttacgcacaattac
agtcaatggatttagacgaagaaacattccaagatacacttgacagcattgattttcagt
cagacttagaaaataacattgagtattttgtcaaaatgttaaaaaatgtgcaggctgatg
ctgaaaagtataaagccgaaaaagaagctttttataaaaagcaaaaacaagcggaagcca
aagcggaaaaatacaaagagacgatcaggcttgcaatggaattgagtcaaaagaaaaaag
ttgacgctggaatgtttaaggtgtctttgcgaagaagtaaaaaagttgagattttggacg
aaacaaaaattcctcttgattacatgcaagaaaaaattgaatacaaaccaatgaaagctg
aaatctcaaaagctttgaaatctggaattgatatatctggagttgaactaatcgaaacag
aaagtttgcaggtaaagtaaatgaggaaatcagaaagtataacagaatatgctaaagcct
tttgtaaagctcagctagaggtaaaacaaccactaaaagataaggataacccatttttca
aaagcaaatacgtgccgcttgaaaatgttacagaagcaatcacaacagcttttgccaata
acgggatatctttttcgcaggacccgacaacaaacacagaaaacggttatatcgatgttg
caacgcttgtcatgcacacgagcggcgaatgggttgagtacgggcctttaagtgttaaac
ctacaaaaaatgatgtacaaggcgctggttcggctatcacttacgcaaaacgctatgcac
tatcggcaatttttgggataacaagcgatcaagatgatgacggcaacgaagatagtaaac
caaacaattccaggcaatcgccaaaagctacaactaaaaaaacacaaaagacaggatatc
aaacaccaaaaatcagcaatatccaaatcgagacttacaagtctgatttaaatgatattg
cgaaagccacaaaccaaaacgttgaagagttaacaaaatggctaaccgatactttaaaag
tgggggaactagaaaatttgcatacggaacacattgtttcagcagacgaattaatcaata
aactcaaaaagaaagcaggactaaaaaatgattaacaacattgtactagtaggtcgcatg
accaaggatgccgaacttcgttatacaccaagtaatcaagcggtagctactttttcactt
gcagttaatcgtaattttaaaaatcaatctggcgaacgtgaggctgattttattaactgt
gttatttggcgccaacaagctgaaaacttggctaactgggcaaaaaaaggtgctttggtt
ggaattacaggtcgtatccaaacgcgtaattatgaaaaccaacaaggtcaacgtatctat
gtaacagaagttgttgcggaaaatttccaattattagaaagtcgcaatagccaacaacag
actaatcaaagcggcaatagttctaattcttattttggcaatgccaacaaaatggatatt
tcagatgatgacttaccattctgagtgtttcgctaagcttctctcaatctaacaggtgaa
agtcctgtcctaacaattaaccagttcggttaggtagctatggcatacgtatgcg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|SAG_0565 Streptococcus agalactiae 2603V/R     conserved domain protein
fig|208435.1.peg.558 Streptococcus agalactiae 2603V/R FIG   Phage single-strand DNA binding protein
gb|AAM99466.1 Streptococcus agalactiae 2603V/R     conserved domain protein
gb|AE014217_21 Streptococcus agalactiae 2603V/R     conserved domain protein
gi|22533586 Streptococcus agalactiae 2603V/R NCBI   conserved domain protein
gi|22536743 Streptococcus agalactiae 2603V/R NCBI   hypothetical protein SAG0565
img|637315767 Streptococcus agalactiae 2603V/R IMG   hypothetical protein
kegg|sag:SAG0565 Streptococcus agalactiae 2603 (serotype V) KEGG   hypothetical protein
ref|NP_687594.1 Streptococcus agalactiae 2603V/R RefSeq   hypothetical protein SAG0565
tr|Q8E100 Streptococcus agalactiae serotype V TrEMBL   Conserved domain protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search