The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|208435.3.peg.558: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: hypothetical protein - phage associated
Translate Function Assignments


Context on contig NC_004116 from base 562051 to 572161 (10111 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
545 562051 562194 144 +           hypothetical protein locus|SAG0549, protein_id|NP_687578.1, gi|22536727, geneID|1013353
546 562415 562191 225 - -4         hypothetical protein locus|SAG0550, protein_id|NP_687579.1, gi|22536728, geneID|1013354
547 562474 562632 159 + 58         FIG01115240: hypothetical protein locus|SAG0551, protein_id|NP_687580.1, gi|22536729, geneID|1013355
548 562662 562850 189 + 29         hypothetical protein locus|SAG0552, protein_id|NP_687581.1, gi|22536730, geneID|1013356
549 563639 562833 807 - -18         hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357
550 563691 563882 192 + 51         prophage LambdaSa1, transcriptional regulator, Cro/CI family locus|SAG0554, protein_id|NP_687583.1, gi|22536732, geneID|1013358
551 563950 564699 750 + 67         Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 2 3 1   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370
563 569396 570715 1320 + 580         Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) locus|SAG0567, protein_id|NP_687596.1, gi|22536745, geneID|1013371
564 570841 571044 204 + 125         hypothetical protein locus|SAG0568, protein_id|NP_687597.1, gi|22536746, geneID|1013372
565 571223 571510 288 + 178         Phage Holliday junction resolvase locus|SAG0569, protein_id|NP_687598.1, gi|22536747, geneID|1013373
566 571701 571847 147 + 190         hypothetical protein locus|SAG0570, protein_id|NP_687599.1, gi|22536748, geneID|1013374
567 571844 572161 318 + -4         hypothetical phage protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|208435.3.peg.558 hypothetical protein - phage associated
MVEIRINGESITFDSNFRDALIFTVDHLKNYDDPSLRQTYNEFKDYTDEDLMGYISTEFD
VDPEMFVDTNSDSRWKIKQRILED

MD5 = a2483322af0bc5959af57e19e37554b6


  DNA Sequence

>fig|208435.3.peg.558 hypothetical protein - phage associated
atggttgaaatcagaattaacggtgagtcaatcacatttgatagcaattttagggatgcg
cttatatttacggtagatcacctaaaaaattatgacgatccttctttgaggcagacttac
aacgagtttaaagattatacagacgaggacttgatgggatatatcagcacagaatttgat
gtagacccggaaatgtttgttgatactaattcagacagcagatggaaaattaaacaacga
attttagaggactga


  DNA with Flanking Sequence

>fig|208435.3.peg.558 hypothetical protein - phage associated
agctaaaaaagctaacaaaacaatgcaatcacaatccaacgttcctagctggtctaatcc
agactacaaaggaccagatttaaaagaatttgcactaggaagcatagacgatatagaaga
tggatcaggagatttttaatttttttaacaaacaaatcaaaaaagattttggtaaaacgg
cgagtaaagagacttttgctaagtttgctagttactgcgccgaaggaatcgaaaaaaatg
gagttaagccaatttttaattggataaacctatacgcttttggaaccggtatgacaacag
cagaagcagaccgattaagaatagagcgatataaacaggagaatacgttatgacaaaaca
acatagagaaacgcttatctggtaccgagcaagtcatcaagagcgtgagaagctgcttga
ttttgggctagttgataaatcacagtacgtgacactattgcggcaattgcgcaagaaata
tgcgatttaggaagggatatatggttgaaatcagaattaacggtgagtcaatcacatttg
atagcaattttagggatgcgcttatatttacggtagatcacctaaaaaattatgacgatc
cttctttgaggcagacttacaacgagtttaaagattatacagacgaggacttgatgggat
atatcagcacagaatttgatgtagacccggaaatgtttgttgatactaattcagacagca
gatggaaaattaaacaacgaattttagaggactgactgtgaacgaagaaatatatgagtc
tagtcgttactggcaaagtagatacagcgacttgatgtctgattatcttaaagaagctga
agaaaatatagagttaaagaaacagttgaagagattaaaagccgaaaattggcagctgaa
acacagaaagaggaaatgatatggcttatttatacgaattagaaggtatttacgcacaat
tacagtcaatggatttagacgaagaaacattccaagatacacttgacagcattgattttc
agtcagacttagaaaataacattgagtattttgtcaaaatgttaaaaaatgtgcaggctg
atgctgaaaagtataaagccgaaaaagaagctttttataaaaagcaaaaacaagcggaag
ccaaagcggaaaaatacaaagagacgatcaggcttgcaatggaattgagtcaaaagaaaa
aagttgacgctggaatgtttaaggtgtctttgcgaagaagtaaaaaagttgagat


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options
Tool Description
General Tools
Psi-Blast NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred Tool for Predicting Transmembrane regions
TMHMM Prediction of transmembrane helices in proteins
Protein Signals for Gram negative bacteria
Gram negative PSORT Prediction of protein localization sites
Gram negative SignalP Predicts the presence and location of signal peptide cleavage sites
Protein Signals for Gram positive bacteria
Gram positive PSORT Prediction of protein localization sites
Gram positive SignalP Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO Subcellular localization predictor at National Chiao Tung University
ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions
FIG search