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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|208435.3.peg.555: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: DNA replication protein dnaD
Translate Function Assignments


Context on contig NC_004116 from base 560334 to 571510 (11177 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
543 560891 560334 558 -           hypothetical protein locus|SAG0547, protein_id|NP_687576.1, gi|22536725, geneID|1013351
544 561690 560893 798 - 1         Phage CI-like repressor locus|SAG0548, protein_id|NP_687577.1, gi|22536726, geneID|1013352
545 562051 562194 144 + 360         hypothetical protein locus|SAG0549, protein_id|NP_687578.1, gi|22536727, geneID|1013353
546 562415 562191 225 - -4         hypothetical protein locus|SAG0550, protein_id|NP_687579.1, gi|22536728, geneID|1013354
547 562474 562632 159 + 58         FIG01115240: hypothetical protein locus|SAG0551, protein_id|NP_687580.1, gi|22536729, geneID|1013355
548 562662 562850 189 + 29         hypothetical protein locus|SAG0552, protein_id|NP_687581.1, gi|22536730, geneID|1013356
549 563639 562833 807 - -18         hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357
550 563691 563882 192 + 51         prophage LambdaSa1, transcriptional regulator, Cro/CI family locus|SAG0554, protein_id|NP_687583.1, gi|22536732, geneID|1013358
551 563950 564699 750 + 67         Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 1 2 3   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370
563 569396 570715 1320 + 580         Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) locus|SAG0567, protein_id|NP_687596.1, gi|22536745, geneID|1013371
564 570841 571044 204 + 125         hypothetical protein locus|SAG0568, protein_id|NP_687597.1, gi|22536746, geneID|1013372
565 571223 571510 288 + 178         Phage Holliday junction resolvase locus|SAG0569, protein_id|NP_687598.1, gi|22536747, geneID|1013373

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|208435.3.peg.555 DNA replication protein dnaD
MADNKKYYYLKLKENFFESDEAIILESMPDGYIYSNILLKLYLRSLKNDGLLMFNNLIPY
NAQMLATITRHQVGTVEKAIQIFRDLQLIEILDNGAIYMTNIQNFVGKSSTEADRIRKLR
AKNNSGVQMLYKCTPEIEIEKDKKIDINIDKELELEQDKEDRFVDVVEANLGRGLVKFEF
DMINDYLIGQNVSKDLFLEAVKVAVANNVRKFNYIARILDNWINDGIKTPEQAYQAQRDF
KAKKANKTMQSQSNVPSWSNPDYKGPDLKEFALGSIDDIEDGSGDF

MD5 = 87c49b764ecb45aec10f080d22bc56c4


  DNA Sequence

>fig|208435.3.peg.555 DNA replication protein dnaD
atggcagataacaaaaagtattactatctaaaattaaaagaaaatttttttgaaagtgat
gaagcaatcattttagaaagtatgcctgacggctatatctatagcaatattttgctcaag
ctatacctaagaagtttaaaaaatgacggtttattaatgtttaacaaccttatcccttac
aacgcacaaatgcttgcaacgattacaagacatcaggttggcactgtcgaaaaggctatt
caaatttttagagacctacaactaattgaaattcttgataatggtgctatatatatgaca
aatattcaaaattttgtcggaaaatcaagcactgaggctgacaggatacgaaaactaaga
gcaaaaaataacagtggtgtacaaatgttgtacaaatgtacaccagagatagagatagag
aaagataaaaagatagatataaatatagataaagagttagaactagaacaagataaagaa
gataggtttgttgatgttgttgaagcaaatcttggtagaggtcttgtaaagtttgagttc
gacatgattaatgactatctcattggacaaaatgtctcaaaggatttgtttttggaagct
gttaaagtagcagttgctaataatgtccgcaaatttaattacatcgctcgcattttggat
aattggattaatgatgggataaagactcctgaacaagcatatcaggctcaaagagacttt
aaagctaaaaaagctaacaaaacaatgcaatcacaatccaacgttcctagctggtctaat
ccagactacaaaggaccagatttaaaagaatttgcactaggaagcatagacgatatagaa
gatggatcaggagatttttaa


  DNA with Flanking Sequence

>fig|208435.3.peg.555 DNA replication protein dnaD
agcgattactaagaaagatgtacaaagacagaaattatcgcaaatacattgacaaggttg
gcggtcgttcaacaaaagttaaaaaatttgaagaatggagaaaattacaaaatgaaaaaa
ttatttaactttattttcgcaaaacaaaaaagaagaaagaccaaaatggacaattgaaac
acatgtctaaacgggaaagtgctatatgacctagcagacgtcaatagatctctacgaaca
agtggatcgagaaaaggagtatgatatggaaaatccaatgacaggagtagcaatactagc
atttatcgctttacttgcatatctcggcaatcgtaatagcaatcaaaagacaattactaa
gactgttgagacggtgttagataactaccaagttgtgcgaaaggttgagagaccaaaacg
cacggattttatagagttacctaccccaggatcatgcgggaaagtttggggcaaggatag
acctttttaaggagtattgaatggcagataacaaaaagtattactatctaaaattaaaag
aaaatttttttgaaagtgatgaagcaatcattttagaaagtatgcctgacggctatatct
atagcaatattttgctcaagctatacctaagaagtttaaaaaatgacggtttattaatgt
ttaacaaccttatcccttacaacgcacaaatgcttgcaacgattacaagacatcaggttg
gcactgtcgaaaaggctattcaaatttttagagacctacaactaattgaaattcttgata
atggtgctatatatatgacaaatattcaaaattttgtcggaaaatcaagcactgaggctg
acaggatacgaaaactaagagcaaaaaataacagtggtgtacaaatgttgtacaaatgta
caccagagatagagatagagaaagataaaaagatagatataaatatagataaagagttag
aactagaacaagataaagaagataggtttgttgatgttgttgaagcaaatcttggtagag
gtcttgtaaagtttgagttcgacatgattaatgactatctcattggacaaaatgtctcaa
aggatttgtttttggaagctgttaaagtagcagttgctaataatgtccgcaaatttaatt
acatcgctcgcattttggataattggattaatgatgggataaagactcctgaacaagcat
atcaggctcaaagagactttaaagctaaaaaagctaacaaaacaatgcaatcacaatcca
acgttcctagctggtctaatccagactacaaaggaccagatttaaaagaatttgcactag
gaagcatagacgatatagaagatggatcaggagatttttaatttttttaacaaacaaatc
aaaaaagattttggtaaaacggcgagtaaagagacttttgctaagtttgctagttactgc
gccgaaggaatcgaaaaaaatggagttaagccaatttttaattggataaacctatacgct
tttggaaccggtatgacaacagcagaagcagaccgattaagaatagagcgatataaacag
gagaatacgttatgacaaaacaacatagagaaacgcttatctggtaccgagcaagtcatc
aagagcgtgagaagctgcttgattttgggctagttgataaatcacagtacgtgacactat
tgcggcaattgcgcaagaaatatgcgatttaggaagggatatatggttgaaatcagaatt
aacggtgagtcaatcacatttgatagcaattttagggatgcgcttatatttacggtagat
cacctaaaaaattatgacgatccttctttgaggcagacttacaacgagtttaaagattat
a


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

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