The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|208435.3.peg.549: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_004116 from base 557682 to 568815 (11134 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
539 557682 558071 390 +           Mobile element protein locus|SAG0543, protein_id|NP_687572.1, gi|22536721, geneID|1013346
540 558254 558601 348 + 182     4: 4 5 3 6   LSU ribosomal protein L19p gene_name|rplS, locus|SAG0544, protein_id|NP_687573.1, gi|22536722, geneID|1013347
rna.91 558712 558783 72 + 110         tRNA-Arg-CCT  
541 559905 558826 1080 - 42         Integrase locus|SAG0545, protein_id|NP_687574.1, gi|22536723, geneID|1013349
542 560092 559910 183 - 4         hypothetical protein  
543 560891 560334 558 - 241         hypothetical protein locus|SAG0547, protein_id|NP_687576.1, gi|22536725, geneID|1013351
544 561690 560893 798 - 1         Phage CI-like repressor locus|SAG0548, protein_id|NP_687577.1, gi|22536726, geneID|1013352
545 562051 562194 144 + 360         hypothetical protein locus|SAG0549, protein_id|NP_687578.1, gi|22536727, geneID|1013353
546 562415 562191 225 - -4         hypothetical protein locus|SAG0550, protein_id|NP_687579.1, gi|22536728, geneID|1013354
547 562474 562632 159 + 58         FIG01115240: hypothetical protein locus|SAG0551, protein_id|NP_687580.1, gi|22536729, geneID|1013355
548 562662 562850 189 + 29         hypothetical protein locus|SAG0552, protein_id|NP_687581.1, gi|22536730, geneID|1013356
549 563639 562833 807 - -18         hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357
550 563691 563882 192 + 51         prophage LambdaSa1, transcriptional regulator, Cro/CI family locus|SAG0554, protein_id|NP_687583.1, gi|22536732, geneID|1013358
551 563950 564699 750 + 67         Phage antirepressor protein locus|SAG0555, protein_id|NP_687584.1, gi|22536733, geneID|1013359
552 564711 564854 144 + 11         hypothetical protein locus|SAG0556, protein_id|NP_687585.1, gi|22536734, geneID|1013360
553 565004 565234 231 + 149         hypothetical protein locus|SAG0557, protein_id|NP_687586.1, gi|22536735, geneID|1013361
554 565372 565596 225 + 137         hypothetical protein locus|SAG0558, protein_id|NP_687587.1, gi|22536736, geneID|1013362
555 565607 566467 861 + 10         DNA replication protein dnaD locus|SAG0559, protein_id|NP_687588.1, gi|22536737, geneID|1013363
556 566448 566681 234 + -20         hypothetical protein locus|SAG0560, protein_id|NP_687589.1, gi|22536738, geneID|1013364
557 566678 566818 141 + -4         Phage protein locus|SAG0561, protein_id|NP_687590.1, gi|22536739, geneID|1013365
558 566829 567083 255 + 10         hypothetical protein - phage associated locus|SAG0562, protein_id|NP_687591.1, gi|22536740, geneID|1013366
559 567086 567247 162 + 2         hypothetical protein locus|SAG0563, protein_id|NP_687592.1, gi|22536741, geneID|1013367
560 567249 567731 483 + 1         hypothetical protein (phage associated) locus|SAG0564, protein_id|NP_687593.1, gi|22536742, geneID|1013368
561 567732 568406 675 + 0         Phage single-strand DNA binding protein locus|SAG0565, protein_id|NP_687594.1, gi|22536743, geneID|1013369
562 568399 568815 417 + -8     3: 7 2 1   Single-stranded DNA-binding protein gene_name|ssb-2, locus|SAG0566, protein_id|NP_687595.1, gi|22536744, geneID|1013370

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|208435.3.peg.549 hypothetical protein
MIESLDIKTILLGSATLLGTTAIKKAENPARAIDDLMTLIGFEKLHEIAENRRNKYITNR
NDFIQKLAKEIQDVVSKNIENLQEPSLSIAGPALEASKFYLEEEELRNLFTKLIASSMDK
SKNEFNHPSFIEIIKQFDKIDAQNFKIISDLYFKKGFVATGTYYTTIIGQDKPLEHIASH
VFVDNLEQNDIAIQSSSLTNLERLGLIQINYKAHVDEKEYYNILNNSFITKKNSELKEQN
KRVLTNLGMITLTLFGVRFSKTCLPDVS

MD5 = e6a8b209799271492544a22710d8a236


  DNA Sequence

>fig|208435.3.peg.549 hypothetical protein
atgattgaaagtcttgatataaagacgattttgcttggttctgctactctcttaggaact
actgccataaagaaagctgaaaatcctgcaagagctattgatgatttaatgacattaatt
ggttttgaaaaattacatgaaatagctgaaaatcgaagaaataagtacattactaacaga
aacgattttattcaaaaattagctaaagaaatacaagatgttgttagtaaaaatattgaa
aatctacaagaacctagtctttcgatagctggaccggctttagaagcatctaaattttat
ttagaagaagaagaacttagaaatttatttacaaaattgattgcttcatctatggataaa
tcaaaaaatgaattcaaccatccatcttttattgagataataaaacagtttgataaaatt
gatgcacaaaatttcaaaattatctcagatttatactttaaaaaaggtttcgttgcaact
ggtacctactatacgacaataattggtcaagataagccgttagagcatattgctagtcat
gtattcgtagataatttagaacaaaatgatatagctattcaaagttcatcattaactaat
ttagaaagactaggactaattcaaattaattacaaagcacacgtagatgagaaagaatat
tacaacattcttaataatagctttataactaaaaagaacagtgaattaaaagaacaaaac
aaaagagtactaacaaatctaggaatgataactcttactttatttggtgttagattttca
aaaacttgtttacctgacgtttcgtaa


  DNA with Flanking Sequence

>fig|208435.3.peg.549 hypothetical protein
ggttaccttgagctgttagtcttttttgactaatagctatatagtcaacgttttcttcaa
aaccatattccgacatcctttcaagccatttagtatattgagtttttatattaagtacat
tgtgtaaatctctaccactgacaactggttcttgattttcgtttagggtgatgtttatta
gttgattcatatagttcctttctagcggtttgttagttttattaacaaatattttgtcta
tcatgttagacgattagttaaaaaaataaatccttaatctttacgtccaaagctttcgcc
aatttcttcagagatgctgtagatgtctctgaatatgaacctgtttctaaaccaaccacg
agcgaacgactaacgttagctttatcagctaattcattttgagtaaatccttttttctct
cgtagttgttttagattaaattgttgcattcccccaccccctttctgtggtataattgaa
ataaaaaacggagttgtattatgattgaaagtcttgatataaagacgattttgcttggtt
ctgctactctcttaggaactactgccataaagaaagctgaaaatcctgcaagagctattg
atgatttaatgacattaattggttttgaaaaattacatgaaatagctgaaaatcgaagaa
ataagtacattactaacagaaacgattttattcaaaaattagctaaagaaatacaagatg
ttgttagtaaaaatattgaaaatctacaagaacctagtctttcgatagctggaccggctt
tagaagcatctaaattttatttagaagaagaagaacttagaaatttatttacaaaattga
ttgcttcatctatggataaatcaaaaaatgaattcaaccatccatcttttattgagataa
taaaacagtttgataaaattgatgcacaaaatttcaaaattatctcagatttatacttta
aaaaaggtttcgttgcaactggtacctactatacgacaataattggtcaagataagccgt
tagagcatattgctagtcatgtattcgtagataatttagaacaaaatgatatagctattc
aaagttcatcattaactaatttagaaagactaggactaattcaaattaattacaaagcac
acgtagatgagaaagaatattacaacattcttaataatagctttataactaaaaagaaca
gtgaattaaaagaacaaaacaaaagagtactaacaaatctaggaatgataactcttactt
tatttggtgttagattttcaaaaacttgtttacctgacgtttcgtaatgttttgatttct
tctaaaatttgagctctcattgtttcattcagctcttgttgatcaacatccatttttgtc
ataatttctactacttttttgaagactagttttgaccaaaagatagatacaacaaatgaa
actattgatggtataattagtaaataaataaactccataccttcctcctactccctcatg
ggagtttttattttgtaataagccaagcgatcagccaagtgataccacctagcactaaca
gtgctggcaatacgccgccttcaaattcaacgcttgttttttccttgccatcacgactag
taaacgtgtgttctaaatcgcctagcattagttttttccaattcattttgtacctcctaa
aaatgttataatcaacttatccttaacgaaaggaggataagctaatggctaaaaatcaac
atgtcgtacctaaccctaatggcggttgggatataaaaggtgcaggcaacagtcgtgcga
ccaaaca


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search