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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|208435.3.peg.540: Streptococcus agalactiae 2603V/R

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NCBI Taxonomy Id: 208435

Current Assignment: LSU ribosomal protein L19p
Translate Function Assignments


Context on contig NC_004116 from base 552547 to 563639 (11093 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
533 553482 552547 936 -       2: 4 2   3'-to-5' oligoribonuclease A, Bacillus type locus|SAG0537, protein_id|NP_687566.1, gi|22536715, geneID|1013340
534 553748 554770 1023 + 265     3: 7 5 6   Adenosine deaminase (EC 3.5.4.4) locus|SAG0538, protein_id|NP_687567.1, gi|22536716, geneID|1013341
535 554829 555272 444 + 58     1: 14   Flavodoxin locus|SAG0539, protein_id|NP_687568.1, gi|22536717, geneID|1013342
536 555349 555624 276 + 76     5: 12 13 16 1 11   Chorismate mutase I (EC 5.4.99.5) locus|SAG0540, protein_id|NP_687569.1, gi|22536718, geneID|1013343
537 555617 556813 1197 + -8     1: 3   EriC-type fluoride/proton exchange protein locus|SAG0541, protein_id|NP_687570.1, gi|22536719, geneID|1013344
538 557266 557649 384 + 452         IS1381, transposase OrfA locus|SAG0542, protein_id|NP_687571.1, gi|22536720, geneID|1013345
539 557682 558071 390 + 32         Mobile element protein locus|SAG0543, protein_id|NP_687572.1, gi|22536721, geneID|1013346
540 558254 558601 348 + 182     4: 15 10 8 9   LSU ribosomal protein L19p gene_name|rplS, locus|SAG0544, protein_id|NP_687573.1, gi|22536722, geneID|1013347
rna.91 558712 558783 72 + 110         tRNA-Arg-CCT  
541 559905 558826 1080 - 42         Integrase locus|SAG0545, protein_id|NP_687574.1, gi|22536723, geneID|1013349
542 560092 559910 183 - 4         hypothetical protein  
543 560891 560334 558 - 241         hypothetical protein locus|SAG0547, protein_id|NP_687576.1, gi|22536725, geneID|1013351
544 561690 560893 798 - 1         Phage CI-like repressor locus|SAG0548, protein_id|NP_687577.1, gi|22536726, geneID|1013352
545 562051 562194 144 + 360         hypothetical protein locus|SAG0549, protein_id|NP_687578.1, gi|22536727, geneID|1013353
546 562415 562191 225 - -4         hypothetical protein locus|SAG0550, protein_id|NP_687579.1, gi|22536728, geneID|1013354
547 562474 562632 159 + 58         FIG01115240: hypothetical protein locus|SAG0551, protein_id|NP_687580.1, gi|22536729, geneID|1013355
548 562662 562850 189 + 29         hypothetical protein locus|SAG0552, protein_id|NP_687581.1, gi|22536730, geneID|1013356
549 563639 562833 807 - -18         hypothetical protein locus|SAG0553, protein_id|NP_687582.1, gi|22536731, geneID|1013357

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Ribospme_LSU_Symbiont vcrecy LSU ribosomal protein L19p
Ribosome_LSU_bacterial gjo LSU ribosomal protein L19p
Single-copy_ribosomal_proteins gjo LSU ribosomal protein L19p
PanGenomes_ForPhylogeny_Str Ravcheev_Dmitry_user LSU ribosomal protein L19p


  Protein Sequence

>fig|208435.3.peg.540 LSU ribosomal protein L19p
MNPLIQSLTEGQLRSDIPEFRAGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYT
VRKISGGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR

MD5 = 87b150829e3e4862eae1f312f77eca6a


  DNA Sequence

>fig|208435.3.peg.540 LSU ribosomal protein L19p
atgaatccattaattcaaagtttgacagaaggtcaacttcgttctgatatccctgagttc
cgtgctggtgatactgtacgtgttcacgctaaagttgtcgaaggtactcgcgaacgtatt
cagatctttgaaggtgttgttatctcacgtaaaggtcaaggaatctcagaaatgtacaca
gtacgtaaaatttctggtggtatcggtgtagagcgtacattcccaattcacactcctcgt
gttgataaaatcgaagttgttcgttatggtaaagtacgtcgtgctaaactttactactta
cgcgcattgcaaggtaaagctgcacgtattaaagaaatccgtcgttaa


  DNA with Flanking Sequence

>fig|208435.3.peg.540 LSU ribosomal protein L19p
gatatgaagttgttcaaaatgagtcgcagaaacatcggacaagctgctaaaatcttggca
gacagtggttatcaagggatcatgaagatgtattcacaagcgcaaactccgaggaaatca
agcaaacttaagccactaactcttgaagataaaacctataaccatacgctatccaaagag
agaatcaaggttgagaatatttttgccaaagtaaaaacgtttaaaatattttcaacaacc
tatcgaaatcgacgcaaacggtttggattacgaatgaatttgattgctggaatgatcaac
cgtgaactaggattttagtttcgcaggaagtctaatatacaaataactattctaaaggat
gacaccttgttcttctagataaaatagctttacaagtaggttaaaatttggtagaattgt
gagagtgtgtgatggacgcacaaaaaacggctaatccgctgagacaagtacttaagatta
gtaagagaaggagaataaaaatgaatccattaattcaaagtttgacagaaggtcaacttc
gttctgatatccctgagttccgtgctggtgatactgtacgtgttcacgctaaagttgtcg
aaggtactcgcgaacgtattcagatctttgaaggtgttgttatctcacgtaaaggtcaag
gaatctcagaaatgtacacagtacgtaaaatttctggtggtatcggtgtagagcgtacat
tcccaattcacactcctcgtgttgataaaatcgaagttgttcgttatggtaaagtacgtc
gtgctaaactttactacttacgcgcattgcaaggtaaagctgcacgtattaaagaaatcc
gtcgttaattttgatgatcagattttaaaaatgcttggttgtttgaggatagtaactatg
ttttaaaactggacaaccaagacgtaaaaaatctgcctgtgggcagtttttttactaggt
ccccttagttcaatggatataacaactccctcctaaggagtaattgctggttcgattccg
gcaggggacatgtaaataacgtcaaaagcctttgtattaaaggctttttgttttattccg
attttaaaaggggcacaaaaggggcagtttgtttatttataatttctttcatatttacag
ttgtgtgactgtaaatagataatgttgtttttggatcgctgtgaccaactctatccatta
tcgcatttagcggtatccctttttctgctaaaaatgatatatgcgagtgtctaaataagt
gcgtgtgataatctccataaattttcaatcgcttattgatgtacgcgtttaaaatcggta
caccgttcgaatttggaaagacgaatga


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003735       F:structural constituent of ribosome
GO:0005840       C:ribosome
GO:0006412       P:translation
cmr|NT04SA0695 Streptococcus agalactiae NEM316     ribosomal protein L19
cmr|SAG_0544 Streptococcus agalactiae 2603V/R     ribosomal protein L19
cmr|SAI_0670 Streptococcus agalactiae H36B     ribosomal protein L19
cmr|SAJ_0660 Streptococcus agalactiae 18RS21     ribosomal protein L19
cmr|SAK_0692 Streptococcus agalactiae A909     ribosomal protein L19
cmr|SAL_0610 Streptococcus agalactiae 515     ribosomal protein L19
cmr|SAM_0573 Streptococcus agalactiae CJB111     ribosomal protein L19
cmr|SAN_0649 Streptococcus agalactiae COH1     ribosomal protein L19
emb|CAD46231.1 Streptococcus agalactiae NEM316 EMBL   ribosomal protein L19
emb|CAR41494.1 Streptococcus uberis 0140J EMBL   50S ribosomal protein L19
fig|205921.3.peg.734 Streptococcus agalactiae A909 FIG   LSU ribosomal protein L19p
fig|205921.4.peg.622 Streptococcus agalactiae A909 FIG   LSU ribosomal protein L19p
fig|208435.1.peg.537 Streptococcus agalactiae 2603V/R FIG   LSU ribosomal protein L19p
fig|211110.1.peg.581 Streptococcus agalactiae NEM316 FIG   LSU ribosomal protein L19p
fig|211110.3.peg.603 Streptococcus agalactiae NEM316 FIG   LSU ribosomal protein L19p
fig|218495.3.peg.571 Streptococcus uberis 0140J FIG   LSU ribosomal protein L19p
fig|218495.5.peg.613 Streptococcus uberis 0140J FIG   LSU ribosomal protein L19p
fig|342613.5.peg.751 Streptococcus agalactiae 18RS21 FIG   LSU ribosomal protein L19p
fig|342614.4.peg.1454 Streptococcus agalactiae 515 FIG   LSU ribosomal protein L19p
fig|342615.4.peg.1747 Streptococcus agalactiae H36B FIG   LSU ribosomal protein L19p
fig|342616.4.peg.832 Streptococcus agalactiae COH1 FIG   LSU ribosomal protein L19p
fig|342617.4.peg.643 Streptococcus agalactiae CJB111 FIG   LSU ribosomal protein L19p
gb|AAM99445.1 Streptococcus agalactiae 2603V/R     ribosomal protein L19
gb|ABA46136.1 Streptococcus agalactiae A909     ribosomal protein L19
gb|AE014216_21 Streptococcus agalactiae 2603V/R     ribosomal protein L19
gb|EAO62780.1 Streptococcus agalactiae 18RS21     ribosomal protein L19
gb|EAO70761.1 Streptococcus agalactiae 515     ribosomal protein L19
gb|EAO73809.1 Streptococcus agalactiae CJB111     ribosomal protein L19
gb|EAO76010.1 Streptococcus agalactiae COH1     ribosomal protein L19
gb|EAO77462.1 Streptococcus agalactiae H36B     ribosomal protein L19
gi|222113621 Streptococcus uberis 0140J NCBI   50S ribosomal protein L19
gi|222152808 Streptococcus uberis 0140J NCBI   50S ribosomal protein L19
gi|22533564 Streptococcus agalactiae 2603V/R NCBI   ribosomal protein L19
gi|22536722 Streptococcus agalactiae 2603V/R NCBI   50S ribosomal protein L19
gi|23095010 Streptococcus agalactiae NEM316 NCBI   ribosomal protein L19
gi|25010656 Streptococcus agalactiae NEM316 NCBI   50S ribosomal protein L19
gi|254799807 organism not parsed/found in ncbi nr NCBI   RecName: Full=50S ribosomal protein L19
gi|39931964 organism not parsed/found in ncbi nr NCBI   RecName: Full=50S ribosomal protein L19
gi|39931968 organism not parsed/found in ncbi nr NCBI   RecName: Full=50S ribosomal protein L19
gi|76563552 Streptococcus agalactiae A909 NCBI   ribosomal protein L19
gi|76586264 Streptococcus agalactiae 18RS21 NCBI   ribosomal protein L19
gi|76788495 Streptococcus agalactiae A909 NCBI   50S ribosomal protein L19
gi|76798392 Streptococcus agalactiae 18RS21 NCBI   ribosomal protein L19
gi|77159607 Streptococcus agalactiae 515 NCBI   ribosomal protein L19
gi|77162851 Streptococcus agalactiae CJB111 NCBI   ribosomal protein L19
gi|77172878 Streptococcus agalactiae COH1 NCBI   ribosomal protein L19
gi|77174629 Streptococcus agalactiae H36B NCBI   ribosomal protein L19
gi|77406752 Streptococcus agalactiae H36B NCBI   ribosomal protein L19
gi|77408521 Streptococcus agalactiae COH1 NCBI   ribosomal protein L19
gi|77411128 Streptococcus agalactiae CJB111 NCBI   ribosomal protein L19
gi|77414315 Streptococcus agalactiae 515 NCBI   ribosomal protein L19
gi|92090572 organism not parsed/found in ncbi nr NCBI   RecName: Full=50S ribosomal protein L19
img|637315745 Streptococcus agalactiae 2603V/R IMG   50S ribosomal protein L19
img|637349321 Streptococcus agalactiae NEM316 IMG   50S ribosomal protein L19
img|637725045 Streptococcus agalactiae A909 IMG   50S ribosomal protein L19
img|638643780 Streptococcus agalactiae 18RS21 IMG   ribosomal protein L19
img|638646921 Streptococcus agalactiae 515 IMG   ribosomal protein L19
img|638648369 Streptococcus agalactiae CJB111 IMG   ribosomal protein L19
img|638650751 Streptococcus agalactiae COH1 IMG   ribosomal protein L19
img|638654040 Streptococcus agalactiae H36B IMG   ribosomal protein L19
kegg|sag:SAG0544 Streptococcus agalactiae 2603 (serotype V) KEGG   50S ribosomal protein L19
kegg|sak:SAK_0692 Streptococcus agalactiae A909 (serotype Ia) KEGG   50S ribosomal protein L19
kegg|san:gbs0587 Streptococcus agalactiae NEM316 (serotype III) KEGG   50S ribosomal protein L19
kegg|sub:SUB0644 Streptococcus uberis 0140J KEGG   50S ribosomal protein L19
ref|NP_687573.1 Streptococcus agalactiae 2603V/R RefSeq   50S ribosomal protein L19
ref|NP_735051.1 Streptococcus agalactiae NEM316 RefSeq   50S ribosomal protein L19
ref|YP_002561985.1 Streptococcus uberis 0140J RefSeq   50S ribosomal protein L19
ref|YP_329323.1 Streptococcus agalactiae A909 RefSeq   50S ribosomal protein L19
ref|ZP_00780634.1 Streptococcus agalactiae 18RS21 RefSeq   ribosomal protein L19
ref|ZP_00783788.1 Streptococcus agalactiae H36B RefSeq   ribosomal protein L19
ref|ZP_00785258.1 Streptococcus agalactiae COH1 RefSeq   ribosomal protein L19
ref|ZP_00787481.1 Streptococcus agalactiae CJB111 RefSeq   ribosomal protein L19
ref|ZP_00790472.1 Streptococcus agalactiae 515 RefSeq   ribosomal protein L19
sp|B9DRQ9 Streptococcus uberis (strain ATCC BAA-854 / 0140J) SwissProt   50S ribosomal protein L19
sp|Q3K2D0 Streptococcus agalactiae serotype Ia SwissProt   50S ribosomal protein L19
sp|Q8E121 Streptococcus agalactiae serotype V SwissProt   50S ribosomal protein L19
sp|Q8E6H6 Streptococcus agalactiae serotype III SwissProt   50S ribosomal protein L19
sp|RL19_STRA1 organism not parsed/found in ncbi nr SwissProt   RecName: Full=50S ribosomal protein L19
sp|RL19_STRA3 organism not parsed/found in ncbi nr SwissProt   RecName: Full=50S ribosomal protein L19
sp|RL19_STRA5 organism not parsed/found in ncbi nr SwissProt   RecName: Full=50S ribosomal protein L19
sp|RL19_STRU0 organism not parsed/found in ncbi nr SwissProt   RecName: Full=50S ribosomal protein L19
tr|Q3CZQ4 Streptococcus agalactiae H36B TrEMBL   50S ribosomal protein L19
tr|Q3D943 Streptococcus agalactiae COH1 TrEMBL   50S ribosomal protein L19
tr|Q3DFX5 Streptococcus agalactiae CJB111 TrEMBL   50S ribosomal protein L19
tr|Q3DK23 Streptococcus agalactiae 515 TrEMBL   50S ribosomal protein L19
tr|Q3DTA8 Streptococcus agalactiae 18RS21 TrEMBL   50S ribosomal protein L19


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