The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|208435.3.peg.537: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: EriC-type fluoride/proton exchange protein
Translate Function Assignments



Context on contig NC_004116 from base 550545 to 561690 (11146 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
531 550545 552065 1521 +           Candidate zinc-binding lipoprotein ZinT locus|SAG0535, protein_id|NP_687564.1, gi|22536713, geneID|1013338
532 552438 552178 261 - 112     3: 2 1 15   LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent gene_name|rpmE2, locus|SAG0536, protein_id|NP_687565.1, gi|22536714, geneID|1013339
533 553482 552547 936 - 108     2: 12 11   3'-to-5' oligoribonuclease A, Bacillus type locus|SAG0537, protein_id|NP_687566.1, gi|22536715, geneID|1013340
534 553748 554770 1023 + 265     3: 16 8 14   Adenosine deaminase (EC 3.5.4.4) locus|SAG0538, protein_id|NP_687567.1, gi|22536716, geneID|1013341
535 554829 555272 444 + 58     1: 4   Flavodoxin locus|SAG0539, protein_id|NP_687568.1, gi|22536717, geneID|1013342
536 555349 555624 276 + 76     5: 13 10 17 6 9   Chorismate mutase I (EC 5.4.99.5) locus|SAG0540, protein_id|NP_687569.1, gi|22536718, geneID|1013343
537 555617 556813 1197 + -8     1: 7   EriC-type fluoride/proton exchange protein locus|SAG0541, protein_id|NP_687570.1, gi|22536719, geneID|1013344
538 557266 557649 384 + 452         IS1381, transposase OrfA locus|SAG0542, protein_id|NP_687571.1, gi|22536720, geneID|1013345
539 557682 558071 390 + 32         Mobile element protein locus|SAG0543, protein_id|NP_687572.1, gi|22536721, geneID|1013346
540 558254 558601 348 + 182     4: 3 2 1 5   LSU ribosomal protein L19p gene_name|rplS, locus|SAG0544, protein_id|NP_687573.1, gi|22536722, geneID|1013347
rna.91 558712 558783 72 + 110         tRNA-Arg-CCT  
541 559905 558826 1080 - 42         Integrase locus|SAG0545, protein_id|NP_687574.1, gi|22536723, geneID|1013349
542 560092 559910 183 - 4         hypothetical protein  
543 560891 560334 558 - 241         hypothetical protein locus|SAG0547, protein_id|NP_687576.1, gi|22536725, geneID|1013351
544 561690 560893 798 - 1         Phage CI-like repressor locus|SAG0548, protein_id|NP_687577.1, gi|22536726, geneID|1013352

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
tsaC_cluster jljoseph Chloride channel protein


  Protein Sequence

>fig|208435.3.peg.537 EriC-type fluoride/proton exchange protein
MIKRFDNYAQYVLVLGFSLLIGGVVGAITAVFGRVLLFLTAFRSDYIAYLLPFLSIVGLF
IVFVYQKFGGKSVKGMGLVFEVGHGNEETIPKRLVPLVILTTWLTHLFGGSAGREGVAVQ
IGATVSHYFQKYCRLQNASQLFLVMGMAAGFAGLFQTPLAATFFAIEVLVVGRLMVSYVL
PSLIAALTANFVSHSLGLEKFSHSIATSMALTPDIILKLLVLGLCFGLCGNLFAYLLAKA
KLIASSRLLNPYKRIFTLGLLATFLLFIFHFGRYSGLGTNLIEASFTNKNLYDYDWLLKL
CLTVITLAAGYQGGEVTPLFAIGASLGVIIAPILGLPVILVAALGYTSVFGSATNTLLGP
ILIGGEVFGFANTPYFVIVCLVAYSISHAHTIYGAQSR

MD5 = 5c5049e5939a57be23a0aa26a2e6f264


  DNA Sequence

>fig|208435.3.peg.537 EriC-type fluoride/proton exchange protein
gtgattaaacgatttgataattatgctcagtacgtacttgttttaggttttagcttacta
attggtggtgtggttggggctattacagcagtctttggacgtgttctattattcctgaca
gcctttagaagtgattatatagcttacctactcccttttcttagcattgttggtttattt
atagtttttgtctatcaaaaatttgggggtaagagtgttaaagggatgggattggtattt
gaagtaggtcatggtaatgaggagactattccgaaacgtcttgttcctctcgtgatatta
acaacttggttaacccacttatttggtggtagtgcaggtcgtgagggggttgctgtacag
attggggctaccgtttcacactactttcaaaaatattgccgtttacaaaacgcttctcaa
cttttcctagtaatgggaatggcagcaggttttgctggtttatttcagactcctttagct
gctactttttttgcgattgaagttttggtagtaggtcgtttaatggtttcgtatgtatta
ccaagtttaattgctgccctgacagcaaatttcgtctcacattctttaggtttagaaaaa
ttttctcatagtatagcaacatcaatggcgttaacaccagatattattctaaaattattg
gttttaggactatgttttggtctgtgtggtaatttatttgcttatttattggctaaagct
aaattaattgcttctagtaggttgctaaacccatataaacggattttcacacttggattg
ttagctacttttttattgtttatcttccattttggacgatattcaggactgggaacaaat
ctaattgaggctagcttcactaataagaacctttatgattatgattggttgttaaaattg
tgtttgacagttattactttggctgcaggttatcagggaggagaagtaactcccttattt
gcaatcggagcaagtttaggagtgattattgcgcccattttaggtttgccagttatttta
gttgctgctttaggctatactagcgtttttgggagtgcaacgaatactctgttaggtcct
atcttaataggaggcgaagtctttggctttgccaacactccttattttgttattgtatgt
cttgttgcttactccatatcacatgctcatacgatttatggtgctcaatctagatag


  DNA with Flanking Sequence

>fig|208435.3.peg.537 EriC-type fluoride/proton exchange protein
tacttctgcaaatctgttgatgagttcgaggctcaattcgcattaacaggagcacaaaaa
ggtgctgattgtgttaaagttgatttagcggcagaagacgaagacattgaaaacttagaa
gcttttgctgaagaaattgcttctaaacttaactaagctaccaaaaagacgaacacgagt
cgtctttttaacttttttaccatcttttgtaactagaatatgagatatagatatggaatt
agaagagattcgtcaagaaatagatgaaatagatcagcaattagtaagccttttagaaac
tagaatgggtctaattttagaggtcatagcatttaaaaagaaacatcgacttccagtttt
agataataatcgtgaaaacgaagtgcttaacaatgtattgaagaaagtccaaaaccatca
atttgacgatgtgatacgagcaactttcaaagacattatgacagaatctcgtgtttatca
aaaggagaatattgtagacggtgattaaacgatttgataattatgctcagtacgtacttg
ttttaggttttagcttactaattggtggtgtggttggggctattacagcagtctttggac
gtgttctattattcctgacagcctttagaagtgattatatagcttacctactcccttttc
ttagcattgttggtttatttatagtttttgtctatcaaaaatttgggggtaagagtgtta
aagggatgggattggtatttgaagtaggtcatggtaatgaggagactattccgaaacgtc
ttgttcctctcgtgatattaacaacttggttaacccacttatttggtggtagtgcaggtc
gtgagggggttgctgtacagattggggctaccgtttcacactactttcaaaaatattgcc
gtttacaaaacgcttctcaacttttcctagtaatgggaatggcagcaggttttgctggtt
tatttcagactcctttagctgctactttttttgcgattgaagttttggtagtaggtcgtt
taatggtttcgtatgtattaccaagtttaattgctgccctgacagcaaatttcgtctcac
attctttaggtttagaaaaattttctcatagtatagcaacatcaatggcgttaacaccag
atattattctaaaattattggttttaggactatgttttggtctgtgtggtaatttatttg
cttatttattggctaaagctaaattaattgcttctagtaggttgctaaacccatataaac
ggattttcacacttggattgttagctacttttttattgtttatcttccattttggacgat
attcaggactgggaacaaatctaattgaggctagcttcactaataagaacctttatgatt
atgattggttgttaaaattgtgtttgacagttattactttggctgcaggttatcagggag
gagaagtaactcccttatttgcaatcggagcaagtttaggagtgattattgcgcccattt
taggtttgccagttattttagttgctgctttaggctatactagcgtttttgggagtgcaa
cgaatactctgttaggtcctatcttaataggaggcgaagtctttggctttgccaacactc
cttattttgttattgtatgtcttgttgcttactccatatcacatgctcatacgatttatg
gtgctcaatctagatagttagtgatgagttttaaaagagtttatcagtttgtagaacgga
atattccgttctcttttttattctcttaaagtttataaaaatggagtttgtcaattttat
gaatgcaaaaattatgtggctaatataatttcttcaaagaaattgattttatgattgtca
ttaaaatactgtaaaatccaattgaatgtgtaggaacttaggttaggataatgtctacaa
gcatttaagtcgcgatggtgaaatgcattataagataaaaagttgatgtggatttcaact
ttatgggaaagagttaagtgacacgaaagctaatatagaaaacgtagcttaaaaaatcaa
atattaaatgaattaaactctcaaaaatcagaaaaaagctaacctagaaacagtaaatca
aatttaaataatagacttcctgcgaaacaaaatatggtacaatagttctatgaattatga
agcaagcaaacaattaactgatgtacgatttaagcgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search