The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|208435.3.peg.536: Streptococcus agalactiae 2603V/R

This feature in The SEED Viewer

NCBI Taxonomy Id: 208435

Current Assignment: Chorismate mutase I (EC 5.4.99.5)
Translate Function Assignments



Context on contig NC_004116 from base 549006 to 560891 (11886 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
530 549006 550403 1398 +           Dipeptidase locus|SAG0534, protein_id|NP_687563.1, gi|22536712, geneID|1013337
531 550545 552065 1521 + 141         Candidate zinc-binding lipoprotein ZinT locus|SAG0535, protein_id|NP_687564.1, gi|22536713, geneID|1013338
532 552438 552178 261 - 112     3: 1 2 12   LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent gene_name|rpmE2, locus|SAG0536, protein_id|NP_687565.1, gi|22536714, geneID|1013339
533 553482 552547 936 - 108     2: 14 15   3'-to-5' oligoribonuclease A, Bacillus type locus|SAG0537, protein_id|NP_687566.1, gi|22536715, geneID|1013340
534 553748 554770 1023 + 265     3: 9 3 11   Adenosine deaminase (EC 3.5.4.4) locus|SAG0538, protein_id|NP_687567.1, gi|22536716, geneID|1013341
535 554829 555272 444 + 58     1: 5   Flavodoxin locus|SAG0539, protein_id|NP_687568.1, gi|22536717, geneID|1013342
536 555349 555624 276 + 76     5: 13 16 10 6 17   Chorismate mutase I (EC 5.4.99.5) locus|SAG0540, protein_id|NP_687569.1, gi|22536718, geneID|1013343
537 555617 556813 1197 + -8     1: 4   EriC-type fluoride/proton exchange protein locus|SAG0541, protein_id|NP_687570.1, gi|22536719, geneID|1013344
538 557266 557649 384 + 452         IS1381, transposase OrfA locus|SAG0542, protein_id|NP_687571.1, gi|22536720, geneID|1013345
539 557682 558071 390 + 32         Mobile element protein locus|SAG0543, protein_id|NP_687572.1, gi|22536721, geneID|1013346
540 558254 558601 348 + 182     4: 8 1 2 7   LSU ribosomal protein L19p gene_name|rplS, locus|SAG0544, protein_id|NP_687573.1, gi|22536722, geneID|1013347
rna.91 558712 558783 72 + 110         tRNA-Arg-CCT  
541 559905 558826 1080 - 42         Integrase locus|SAG0545, protein_id|NP_687574.1, gi|22536723, geneID|1013349
542 560092 559910 183 - 4         hypothetical protein  
543 560891 560334 558 - 241         hypothetical protein locus|SAG0547, protein_id|NP_687576.1, gi|22536725, geneID|1013351

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Major_Facilitator_Transporter Blaby_Crysten_user Chorismate mutase I (EC 5.4.99.5)
Chorismate_Synthesis VeronikaV Chorismate mutase I (EC 5.4.99.5)
Phenylalanine_and_Tyrosine_Branches_from_Chorismate carolb Chorismate mutase I (EC 5.4.99.5)
Phenylalanine_and_Tyrosine_biosynthesis_PanGenomes Acharya_Geeta_user Chorismate mutase I (EC 5.4.99.5)
DUF2156 vcrecy Chorismate mutase I (EC 5.4.99.5)


  Protein Sequence

>fig|208435.3.peg.536 Chorismate mutase I (EC 5.4.99.5)
MELEEIRQEIDEIDQQLVSLLETRMGLILEVIAFKKKHRLPVLDNNRENEVLNNVLKKVQ
NHQFDDVIRATFKDIMTESRVYQKENIVDGD

MD5 = e91c383b31bb2c631948b6817f788562


  DNA Sequence

>fig|208435.3.peg.536 Chorismate mutase I (EC 5.4.99.5)
atggaattagaagagattcgtcaagaaatagatgaaatagatcagcaattagtaagcctt
ttagaaactagaatgggtctaattttagaggtcatagcatttaaaaagaaacatcgactt
ccagttttagataataatcgtgaaaacgaagtgcttaacaatgtattgaagaaagtccaa
aaccatcaatttgacgatgtgatacgagcaactttcaaagacattatgacagaatctcgt
gtttatcaaaaggagaatattgtagacggtgattaa


  DNA with Flanking Sequence

>fig|208435.3.peg.536 Chorismate mutase I (EC 5.4.99.5)
ttatgctagcatgaccggaaatactgaagaaattgctgacattgttgctgataaattacg
tgacttgggtctagatgttgaagtagaagagtgtacgatggttgatgctgcagattttga
agatgctgacattgcaattgttgccacttatacatatggtgatggagatttaccagatga
aatcgtggacttttatgaagatttagcagaggttgatttatctggtaaagtttacggcgt
agtgggttcaggtgatactttctatgattacttctgcaaatctgttgatgagttcgaggc
tcaattcgcattaacaggagcacaaaaaggtgctgattgtgttaaagttgatttagcggc
agaagacgaagacattgaaaacttagaagcttttgctgaagaaattgcttctaaacttaa
ctaagctaccaaaaagacgaacacgagtcgtctttttaacttttttaccatcttttgtaa
ctagaatatgagatatagatatggaattagaagagattcgtcaagaaatagatgaaatag
atcagcaattagtaagccttttagaaactagaatgggtctaattttagaggtcatagcat
ttaaaaagaaacatcgacttccagttttagataataatcgtgaaaacgaagtgcttaaca
atgtattgaagaaagtccaaaaccatcaatttgacgatgtgatacgagcaactttcaaag
acattatgacagaatctcgtgtttatcaaaaggagaatattgtagacggtgattaaacga
tttgataattatgctcagtacgtacttgttttaggttttagcttactaattggtggtgtg
gttggggctattacagcagtctttggacgtgttctattattcctgacagcctttagaagt
gattatatagcttacctactcccttttcttagcattgttggtttatttatagtttttgtc
tatcaaaaatttgggggtaagagtgttaaagggatgggattggtatttgaagtaggtcat
ggtaatgaggagactattccgaaacgtcttgttcctctcgtgatattaacaacttggtta
acccacttatttggtggtagtgcaggtcgtgagggggttgctgtacagattggggctacc
gtttcacactactttcaaaaatattgccgtttacaaaacgcttctcaacttttcctagta
atgggaatggcagcaggttttgctggtttatttcagactcctttagctgctacttttttt
gcgattgaagttttgg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search