The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|196164.6.peg.851: Corynebacterium efficiens YS-314

This feature in The SEED Viewer

NCBI Taxonomy Id: 196164

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_004369 from base 879243 to 890346 (11104 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
843 879243 879482 240 +           hypothetical protein locus|CE0825, protein_id|NP_737435.1, gi|25027381, geneID|1032931
844 879697 879575 123 - 92         hypothetical protein  
845 880015 880233 219 + 317         hypothetical protein locus|CE0827, protein_id|NP_737437.1, gi|25027383, geneID|1032933
846 880497 881018 522 + 263         hypothetical protein locus|CE0828, protein_id|NP_737438.1, gi|25027384, geneID|1032934
847 881146 881979 834 + 127         FIG00549605: hypothetical protein locus|CE0829, protein_id|NP_737439.1, gi|25027385, geneID|1032935
848 881988 882272 285 + 8         FIG00549153: hypothetical protein locus|CE0830, protein_id|NP_737440.1, gi|25027386, geneID|1032936
849 882313 882477 165 + 40         hypothetical protein  
850 882477 882776 300 + -1         hypothetical protein locus|CE0831, protein_id|NP_737441.1, gi|25027387, geneID|1032937
851 883684 884085 402 + 907         hypothetical protein locus|CE0834, protein_id|NP_737444.1, gi|25027390, geneID|1032940
852 885062 886327 1266 + 976         hypothetical protein locus|CE0837, protein_id|NP_737447.1, gi|25027393, geneID|1032943
853 887066 888274 1209 + 738         FIG00548751: hypothetical protein locus|CE0839, protein_id|NP_737449.1, gi|25027395, geneID|1032945
854 888811 890346 1536 + 536         phage terminase, large subunit, putative locus|CE0841, protein_id|NP_737451.1, gi|25027397, geneID|1032947

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|196164.6.peg.851 hypothetical protein
MELPGTPARTIESALDAQEDTGAMLYPAQTALVGKVAEIMGQKHRIRCVASPDGVLSRVL
LTGTMYGLTVTEGQEQTSEDSAPDDKPLSFDDAEPQDYDVPMFDVDEEEDTDTTPAPAPG
LRIVGARPMGGAS

MD5 = d0e9934ebdc63071c69157d290f66057


  DNA Sequence

>fig|196164.6.peg.851 hypothetical protein
gtggagctcccgggcactccggcccgcaccattgagtcggcactggatgcgcaggaggac
acgggcgcgatgctgtatcccgcccagaccgcgttggtcggcaaggtagcggagatcatg
gggcaaaagcaccgtatccggtgtgtggcatcccctgacggtgtgctgtcgcgggtgctg
ctgacgggcacgatgtacgggctgacggtcacagaggggcaggagcagacctccgaggac
agtgctccagatgataagcctctgtcgtttgatgacgccgagccccaggactacgacgtg
cccatgttcgacgtcgacgaggaggaggacaccgacaccaccccagcaccagctccaggg
ctacggattgtgggtgcccgacctatgggcggtgcgtcatga


  DNA with Flanking Sequence

>fig|196164.6.peg.851 hypothetical protein
aaggtcaccttgcataagtggatgtgtggagagaaagggtttctccatccggagatacct
ggacagcttgaacttttagaaggagaaccttaatggcaacgatgatgaggcagtcgaaga
ttatttgttatcacgatgagctccaggcggcgttgagcgcggcgttgaaggtcgcggata
agaagaacttcggttcgatccagtttcgaccaattccagaagatgaggtcattcagattt
cggcacttaatcccacctcgacttttatggccacggtgcctacagagatgtgcgatgtgg
tcgaggggcgcgatgagatctttgagtgtctcttgtccgaggccagcgtgatggctcggt
tcccggtcaagatgcctaaagggtctgatggggaagttccgaaggctgggctgattatcg
cggaatcgtggatccagattactgatgagactggtctgggtgtcggtattcgccataccc
ggattaggcgcaatagtgaggtggagctcccgggcactccggcccgcaccattgagtcgg
cactggatgcgcaggaggacacgggcgcgatgctgtatcccgcccagaccgcgttggtcg
gcaaggtagcggagatcatggggcaaaagcaccgtatccggtgtgtggcatcccctgacg
gtgtgctgtcgcgggtgctgctgacgggcacgatgtacgggctgacggtcacagaggggc
aggagcagacctccgaggacagtgctccagatgataagcctctgtcgtttgatgacgccg
agccccaggactacgacgtgcccatgttcgacgtcgacgaggaggaggacaccgacacca
ccccagcaccagctccagggctacggattgtgggtgcccgacctatgggcggtgcgtcat
gagcttgatcgtggagatgtctccggagcgacgtgcagcccacgaggcactcctggaggg
cattggtatttgccagcaggcagagtaccgacgtaagccgggcgccccgggcttgtggga
ctccatgcatgggcgggaggcctgggaagacgtgcaaaagcgccaccgtgaggcgcgcat
cctttgccggaagtgccctctgctggccgcatgtgaacaggccctgtctgattacgagaa
gcacagcgagggtgtcgatggagtgatggcagccagatatagcgatgtcagctattccag
caatgctcgagagcggcagacgcactgcgccgggtgccaggtcaggctgcatcgccaggg
ttcaacccgcacggtaccggacagccaccgacgccacgtcggggaaggtctctgcagcga
gtgctatccgcagttcgctacccactccccagatcggaggacagcagcatgacacacgcc
cctatcaaggaccttcgggagt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search