The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
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842 | 876988 | 876839 | 150 | - | ![]() |
hypothetical protein | locus|CE0821, protein_id|NP_737431.1, gi|25027377, geneID|1032927 | |||||
843 | 879243 | 879482 | 240 | + | 2254 | ![]() |
hypothetical protein | locus|CE0825, protein_id|NP_737435.1, gi|25027381, geneID|1032931 | ||||
844 | 879697 | 879575 | 123 | - | 92 | ![]() |
hypothetical protein | |||||
845 | 880015 | 880233 | 219 | + | 317 | ![]() |
hypothetical protein | locus|CE0827, protein_id|NP_737437.1, gi|25027383, geneID|1032933 | ||||
846 | 880497 | 881018 | 522 | + | 263 | ![]() |
hypothetical protein | locus|CE0828, protein_id|NP_737438.1, gi|25027384, geneID|1032934 | ||||
847 | 881146 | 881979 | 834 | + | 127 | ![]() |
FIG00549605: hypothetical protein | locus|CE0829, protein_id|NP_737439.1, gi|25027385, geneID|1032935 | ||||
848 | 881988 | 882272 | 285 | + | 8 | ![]() |
FIG00549153: hypothetical protein | locus|CE0830, protein_id|NP_737440.1, gi|25027386, geneID|1032936 | ||||
849 | 882313 | 882477 | 165 | + | 40 | ![]() |
hypothetical protein | |||||
850 | 882477 | 882776 | 300 | + | -1 | ![]() |
hypothetical protein | locus|CE0831, protein_id|NP_737441.1, gi|25027387, geneID|1032937 | ||||
851 | 883684 | 884085 | 402 | + | 907 | ![]() |
hypothetical protein | locus|CE0834, protein_id|NP_737444.1, gi|25027390, geneID|1032940 | ||||
852 | 885062 | 886327 | 1266 | + | 976 | ![]() |
hypothetical protein | locus|CE0837, protein_id|NP_737447.1, gi|25027393, geneID|1032943 | ||||
853 | 887066 | 888274 | 1209 | + | 738 | ![]() |
FIG00548751: hypothetical protein | locus|CE0839, protein_id|NP_737449.1, gi|25027395, geneID|1032945 |
Annotation History / View All Related Annotations | Help on Annotations |
Score | Peg | Function |
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Key Link Explains Key |
Value |
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Compare Regions |
Tool | Description |
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General Tools | |
Psi-Blast | NCBI's psi-blast is used to locate distant similarities |
Transmembrane Predictions | |
TMpred | Tool for Predicting Transmembrane regions |
TMHMM | Prediction of transmembrane helices in proteins |
Protein Signals for Gram negative bacteria | |
Gram negative PSORT | Prediction of protein localization sites |
Gram negative SignalP | Predicts the presence and location of signal peptide cleavage sites |
Protein Signals for Gram positive bacteria | |
Gram positive PSORT | Prediction of protein localization sites |
Gram positive SignalP | Predicts the presence and location of signal peptide cleavage sites |
Other useful tools | |
LipoP | Prediction of lipoproteins and signal peptides in Gram negative bacteria |
Radar | Rapid Automatic Detection and Alignment of Repeats in protein sequences |
PPSearch | Search for protein motifs against all patterns stored in the PROSITE pattern database |
Gram negative CELLO | Subcellular localization predictor at National Chiao Tung University |
Gram positive CELLO | Subcellular localization predictor at National Chiao Tung University |
ProDom | A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
PDB | An Information Portal to Biological Macromolecular Structures |
For Specific Organisms | |
RNAFold | The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. |