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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|195102.6.peg.1184: Clostridium perfringens str. 13

This feature in The SEED Viewer

NCBI Taxonomy Id: 195102

Current Assignment: no significant homology.
Translate Function Assignments



Context on contig NC_003366 from base 1303510 to 1317242 (13733 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1175 1303510 1306695 3186 +           FIG00526792: hypothetical protein locus|CPE1103, protein_id|NP_562019.1, gi|18310085, geneID|989412
1176 1306777 1307226 450 + 81         no significant homology. locus|CPE1104, protein_id|NP_562020.1, gi|18310086, geneID|989413
1177 1307241 1307561 321 + 14         no significant homology. locus|CPE1105, protein_id|NP_562021.1, gi|18310087, geneID|989414
1178 1307575 1307745 171 + 13         no significant homology. locus|CPE1106, protein_id|NP_562022.1, gi|18310088, geneID|989415
1179 1307775 1308695 921 + 29         no significant homology. locus|CPE1107, protein_id|NP_562023.1, gi|18310089, geneID|989416
1180 1309065 1309247 183 + 369         no significant homology locus|CPE1108, protein_id|NP_562024.1, gi|18310090, geneID|989417
1181 1309449 1309904 456 + 201         FIG00526667: hypothetical protein locus|CPE1109, protein_id|NP_562025.1, gi|18310091, geneID|989418
1182 1310119 1311216 1098 + 214         kilA protein, putative phage-related DNA binding protein locus|CPE1110, protein_id|NP_562026.1, gi|18310092, geneID|989419
1183 1311383 1311649 267 + 166         FIG00522631: hypothetical protein locus|CPE1112, protein_id|NP_562028.1, gi|18310094, geneID|989421
1184 1311688 1312071 384 + 38         no significant homology. locus|CPE1113, protein_id|NP_562029.1, gi|18310095, geneID|989422
1185 1312073 1312252 180 + 1         FIG00523724: hypothetical protein locus|CPE1114, protein_id|NP_562030.1, gi|18310096, geneID|989423
1186 1312258 1312500 243 + 5         FIG00533121: hypothetical protein locus|CPE1115, protein_id|NP_562031.1, gi|18310097, geneID|989424
1187 1312560 1312970 411 + 59         FIG00513960: hypothetical protein locus|CPE1116, protein_id|NP_562032.1, gi|18310098, geneID|989425
1188 1313082 1313567 486 + 111         hypothetical protein locus|CPE1117, protein_id|NP_562033.1, gi|18310099, geneID|989426
1189 1313567 1315243 1677 + -1         Phage terminase large subunit locus|CPE1118, protein_id|NP_562034.1, gi|18310100, geneID|989427
1190 1315442 1316665 1224 + 198         Phage portal protein locus|CPE1120, protein_id|NP_562036.1, gi|18310102, geneID|989429
1191 1316640 1317242 603 + -26         phage phi-C31 gp35-like protein locus|CPE1121, protein_id|NP_562037.1, gi|18310103, geneID|989430

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|195102.6.peg.1184 no significant homology.
MGKKVLALSILGLIASFSLTGCMAGWQNTKATHGGYFTNNKSDYVVLNESGGQIMDCWIL
DDTYVKQNTDTDGFSLVDKNGNGILVQGDSKIIRLNNKTDMSKYVEYHKEKDLISYEEFY
KIHKGEN

MD5 = 129b0d37080c02ece4a72f378525146e


  DNA Sequence

>fig|195102.6.peg.1184 no significant homology.
atgggaaagaaagttttggcgttaagtattttgggactaatagcaagttttagtttaaca
ggttgtatggctggttggcaaaatacaaaagcaacacatggagggtattttacaaacaat
aagagtgattatgttgttcttaatgagagtggtggacaaataatggattgttggatatta
gatgacacatatgtaaaacaaaataccgatacagatggatttagtcttgttgataaaaat
ggcaatggaattttagtacaaggtgattcaaaaatcattagattaaataataaaacagac
atgtctaaatatgtagaatatcataaagaaaaagatttaatatcatatgaagaattctat
aaaatacataaaggagagaattaa


  DNA with Flanking Sequence

>fig|195102.6.peg.1184 no significant homology.
ctttttacataagaaatatagaagaatagtaggtgattatacaatgataattgattatgt
ttatttattaatatttgcattgtttattttgacaatttataaagtcgcaaagatagaaaa
taaatggggtttaatattgtatataggaacaataattatttgcttaataaaaataataac
aggagtgtgtagtatatgttagatgtaaatgaattaaagctgaaaaatataagattttat
aaaggaagatatgttgttagattaatgagaagttataaaacactatctgaagcaaagaaa
ttaaagaaattcttaaagcaatatataaattgtgttagtatatatcaaacaaaaaatgga
tttatggtacaaacatataaagaatataaaactttagaagatgcaataaaggtaagagat
tatttaacagaaaaattagaagaacgaaagagtgtagcttaatgtttataacgaaataaa
tatgttaggagagaattaatatgggaaagaaagttttggcgttaagtattttgggactaa
tagcaagttttagtttaacaggttgtatggctggttggcaaaatacaaaagcaacacatg
gagggtattttacaaacaataagagtgattatgttgttcttaatgagagtggtggacaaa
taatggattgttggatattagatgacacatatgtaaaacaaaataccgatacagatggat
ttagtcttgttgataaaaatggcaatggaattttagtacaaggtgattcaaaaatcatta
gattaaataataaaacagacatgtctaaatatgtagaatatcataaagaaaaagatttaa
tatcatatgaagaattctataaaatacataaaggagagaattaatatggggattttagaa
gttttaacattaatatttatagtattaaagctatgtggagtaattgcttggacttggtgg
ttagttttattaccagagattataggattaatattatactttatagttgggataggaatt
acaattacaggaaagaaaattagtagtaagaaaatggaggattaaaaaagatgataggat
ttactagaaaagaaagaaaaattataaaaacatattttaatagaagaaataatttaagac
atttagctgataatatagaaaagttagaagataaagagttagctaatattttaagaaaga
ctttatttaatagatataaggtagagtttataagtggaaatgaagatagattagcagata
tctatactaaagaaatgttagaaattggtgttaagtcttattgtatattatagatattat
tatcttaaataaaatacacgtaaatgagtattaataataaaggagaataaagatgatata
taca


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT03CP1180 Clostridium perfringens 13     lipoprotein, putative
dbj|BAB80819.1 Clostridium perfringens str. 13     hypothetical protein
fig|195102.1.peg.1176 Clostridium perfringens str. 13 FIG   no significant homology.
gi|18144774 Clostridium perfringens str. 13 NCBI   hypothetical protein
gi|18310095 Clostridium perfringens str. 13 NCBI   hypothetical protein CPE1113
img|637252468 Clostridium perfringens 13 IMG   hypothetical protein
kegg|cpe:CPE1113 Clostridium perfringens 13 KEGG   hypothetical protein
pathema|ntcp03.3.cds.ORF01298 Clostridium perfringens     lipoprotein, putative
ref|NP_562029.1 Clostridium perfringens str. 13 RefSeq   hypothetical protein CPE1113
tr|Q8XLC9 Clostridium perfringens TrEMBL   Putative uncharacterized protein CPE1113


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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