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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|195102.6.peg.1180: Clostridium perfringens str. 13

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NCBI Taxonomy Id: 195102

Current Assignment: no significant homology
Translate Function Assignments



Context on contig NC_003366 from base 1303510 to 1315243 (11734 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1175 1303510 1306695 3186 +           FIG00526792: hypothetical protein locus|CPE1103, protein_id|NP_562019.1, gi|18310085, geneID|989412
1176 1306777 1307226 450 + 81         no significant homology. locus|CPE1104, protein_id|NP_562020.1, gi|18310086, geneID|989413
1177 1307241 1307561 321 + 14         no significant homology. locus|CPE1105, protein_id|NP_562021.1, gi|18310087, geneID|989414
1178 1307575 1307745 171 + 13         no significant homology. locus|CPE1106, protein_id|NP_562022.1, gi|18310088, geneID|989415
1179 1307775 1308695 921 + 29         no significant homology. locus|CPE1107, protein_id|NP_562023.1, gi|18310089, geneID|989416
1180 1309065 1309247 183 + 369         no significant homology locus|CPE1108, protein_id|NP_562024.1, gi|18310090, geneID|989417
1181 1309449 1309904 456 + 201         FIG00526667: hypothetical protein locus|CPE1109, protein_id|NP_562025.1, gi|18310091, geneID|989418
1182 1310119 1311216 1098 + 214         kilA protein, putative phage-related DNA binding protein locus|CPE1110, protein_id|NP_562026.1, gi|18310092, geneID|989419
1183 1311383 1311649 267 + 166         FIG00522631: hypothetical protein locus|CPE1112, protein_id|NP_562028.1, gi|18310094, geneID|989421
1184 1311688 1312071 384 + 38         no significant homology. locus|CPE1113, protein_id|NP_562029.1, gi|18310095, geneID|989422
1185 1312073 1312252 180 + 1         FIG00523724: hypothetical protein locus|CPE1114, protein_id|NP_562030.1, gi|18310096, geneID|989423
1186 1312258 1312500 243 + 5         FIG00533121: hypothetical protein locus|CPE1115, protein_id|NP_562031.1, gi|18310097, geneID|989424
1187 1312560 1312970 411 + 59         FIG00513960: hypothetical protein locus|CPE1116, protein_id|NP_562032.1, gi|18310098, geneID|989425
1188 1313082 1313567 486 + 111         hypothetical protein locus|CPE1117, protein_id|NP_562033.1, gi|18310099, geneID|989426
1189 1313567 1315243 1677 + -1         Phage terminase large subunit locus|CPE1118, protein_id|NP_562034.1, gi|18310100, geneID|989427

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|195102.6.peg.1180 no significant homology
MIDYFKNLIPKPMIVDEETLEKILDVIEVQSKEPSEKRDTSKTIEALERGRELLNTLFPK

MD5 = 11c4a7fbadf5c0b32fa7f078834cd1c6


  DNA Sequence

>fig|195102.6.peg.1180 no significant homology
atgattgattatttcaagaatttaattccaaagcctatgattgtagatgaggaaacactt
gaaaagatcttggatgtaatagaagttcaaagtaaagaaccttctgagaaaagagatact
agtaaaacaattgaagcattagaaaggggtagagaattactaaatactttatttcctaaa
tag


  DNA with Flanking Sequence

>fig|195102.6.peg.1180 no significant homology
tacaagctataaataataaaacagttacagtagaacaattgaaaagattaaaagaaatag
acagtatattagataaaaataactataaaactacaaacaaagaacaacgagaaatagaag
atttactataaaaaagaaaaatacaattgtaacatcttataaaatcaagcttattttttg
aacacacttttttggtgtcctcaattttaactaagctaattttgaacacacctttttagt
gtcctcattggagtgtaataatatagaataataataataagataaaacaactattcccac
actcacgaacttaacgcttacgctattcgttcatgtgtttttcttttttatatatttatt
ctatctgttttcttttttttatcctttataaatgacttattttggttagtattttgttaa
attatagctttattttgcttagatgtagaattataaggttaagctattatagagctaatt
attgttaaggagtgataaaaatgattgattatttcaagaatttaattccaaagcctatga
ttgtagatgaggaaacacttgaaaagatcttggatgtaatagaagttcaaagtaaagaac
cttctgagaaaagagatactagtaaaacaattgaagcattagaaaggggtagagaattac
taaatactttatttcctaaatagggtgttagctaccgcaacgttccacgtttgcgtacgc
tttcggtcgtggaaagaaaattattcataaattcctcattcttattagtgatacttatta
gagctgcacacatcataaagcaactctataccaattagagattactattaatttagtagt
cttttttttattacaaaaatattatacgaaggtggtatgtaaaaatgataaaagaattag
aaagaatactaacaaaaaaattaaaacatcaaatatttattgatgatgagttttctgtaa
agataactaagcaaaagttaggatataagttatctattaaatctacagataataaaatag
aattatttgctgatgttttagaagatatagatttaagtcaacttatgtatttatttatta
agaatctttattatacagaagttaattggagaactaaagaaatacatagaactaatagtt
tcttgtatagaaaggctaaacaattagctacttggagtgctag


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT03CP1176 Clostridium perfringens 13     pyruvate dehydrogenase kinase 2, putative
dbj|BAB80814.1 Clostridium perfringens str. 13     hypothetical protein
fig|195102.1.peg.1171 Clostridium perfringens str. 13 FIG   no significant homology
gi|18144769 Clostridium perfringens str. 13 NCBI   hypothetical protein
gi|18310090 Clostridium perfringens str. 13 NCBI   hypothetical protein CPE1108
img|637252463 Clostridium perfringens 13 IMG   hypothetical protein
kegg|cpe:CPE1108 Clostridium perfringens 13 KEGG   hypothetical protein
pathema|ntcp03.3.cds.ORF01294 Clostridium perfringens     pyruvate dehydrogenase kinase 2, putative
ref|NP_562024.1 Clostridium perfringens str. 13 RefSeq   hypothetical protein CPE1108
tr|Q8XLD4 Clostridium perfringens TrEMBL   Putative uncharacterized protein CPE1108


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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