The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|158879.11.peg.171: Staphylococcus aureus subsp. aureus N315

This feature in The SEED Viewer

NCBI Taxonomy Id: 158879

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_002745 from base 182832 to 193336 (10505 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
164 182832 183977 1146 +           Capsular polysaccharide synthesis enzyme Cap8P gene_name|capP, locus|SA0159, protein_id|NP_373401.1, gi|15925868, geneID|1122934
165 184368 184042 327 - 64     1: 1 dlit(14570922)
dlit(15520015)
Heme-degrading monooxygenase, staphylobilin-producing (EC 1.14.99.48) # IsdI locus|SA0160, protein_id|NP_373402.1, gi|15925869, geneID|1122935
166 184758 184375 384 - 6     1: 1   Inner membrane protein YbaN locus|SA0161, protein_id|NP_373403.1, gi|15925870, geneID|1122936
167 185185 186672 1488 + 426     3: 4 6 7   Aldehyde dehydrogenase B (EC 1.2.1.22) gene_name|aldA, locus|SA0162, protein_id|NP_373404.1, gi|15925871, geneID|1122937
168 187319 188278 960 + 646     3: 3 8 5   Cobalt-zinc-cadmium resistance protein locus|SA0163, protein_id|NP_373405.1, gi|15925872, geneID|1122938
169 188407 188270 138 - -9         hypothetical protein  
170 188346 188525 180 + -62         hypothetical protein  
171 188543 188388 156 - -138         hypothetical protein locus|SAS005, protein_id|NP_373406.1, gi|15925873, geneID|1122939
172 188438 188590 153 + -106         hypothetical protein  
173 188776 188573 204 - -18         FIG01108246: hypothetical protein locus|SA0164, protein_id|NP_373407.1, gi|15925874, geneID|1122940
174 188955 189467 513 + 178         FIG01108032: hypothetical protein locus|SA0165, protein_id|NP_373408.1, gi|15925875, geneID|1122941
175 189809 190549 741 + 341         ABC transporter, ATP-binding protein locus|SA0166, protein_id|NP_373409.1, gi|15925876, geneID|1122942
176 190563 191534 972 + 13         FIG01108009: hypothetical protein locus|SA0167, protein_id|NP_373410.1, gi|15925877, geneID|1122943
177 191531 192292 762 + -4         ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) locus|SA0168, protein_id|NP_373411.1, gi|15925878, geneID|1122944
178 192302 193336 1035 + 9     1: 2   Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) locus|SA0169, protein_id|NP_373412.1, gi|15925879, geneID|1122945

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|158879.11.peg.171 hypothetical protein
MIFSQNLFRCPTPTCIVCRNWESNFSLLGPTPQLALPVEFLFEILCVGAPD

MD5 = c3f9ccaf448b2fa78e8f2b10f0818ac0


  DNA Sequence

>fig|158879.11.peg.171 hypothetical protein
atgatattttcgcaaaatttatttcgttgtcccaccccaacttgcattgtctgtagaaat
tgggaatccaatttctctttgttggggcccacaccccaacttgcattgcctgtagaattt
cttttcgaaattctctgtgttggggcccctgactag


  DNA with Flanking Sequence

>fig|158879.11.peg.171 hypothetical protein
ttcgtagatagtgatgctgcctttgcttctagttcttctttcgttgatgcaaaatcaaga
ttgttagcttctaataaaaataatgtcattaataagacctcctataacaatggttgaaaa
aatattactataattcttatcggattacaaggatattgagcgatttttttaaatatttag
ataaaattctgtaaaatatattttcaaagagtataaaaatcatgttagggtataagtaaa
taaacatatatatagggggctatcattatggataaagaatctgtcgtagcaagtttagct
agaaacaaaaagattgctgtagaaacaatggccggtcaaagatacatcatagaacgcatt
ttacatacaaatgatgaaaaacatattcatattttgaaacctaaagatgtcgtgttagat
gtagatagcatcaaagaaattgacgaaaatcatttaaatgatgcaacataatccaaaaca
aacgtgggagtgggacagaaatgatattttcgcaaaatttatttcgttgtcccaccccaa
cttgcattgtctgtagaaattgggaatccaatttctctttgttggggcccacaccccaac
ttgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactagaatt
gaaaaaagcttgttacaagcgcattttcgttcagtcaactactgccaatataacttcgta
gagcatagaacattgatttatgtcccagcctgtacaatgttttatttatgttaatttgtc
gaagtatggctcatctaatggattcaattgcaagttttcaatttgcaacgttgaatgtgc
aatgccatatttttctttcaacaatgatgatacttgatcaatcgcttgataatcatcacc
ctcatattttttatctaacacaacatgggcacttaatgaataatgctctgttgtaatact
ccacaaatgaaattcatgtacatctaatatgccatctatgtttttaatatctgccataat
ttgatcagtatccaaatgttgaggcacactttccattaaaattaaccacgcattacgcgt
aattttataaccaccacgtaaaatgatgagtgaaattacaatactaatgattgggtcgat
gatgcgccatcctgta


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
dbj|BAB41384.1 Staphylococcus aureus subsp. aureus N315     hypothetical protein
dbj|BAB56331.1 Staphylococcus aureus subsp. aureus Mu50     hypothetical protein
dbj|BAF77051.1 Staphylococcus aureus subsp. aureus Mu3     hypothetical protein
fig|158878.1.peg.169 Staphylococcus aureus subsp. aureus Mu50 FIG   hypothetical protein
fig|158878.14.peg.169 Staphylococcus aureus subsp. aureus Mu50 FIG   hypothetical protein
fig|158879.1.peg.167 Staphylococcus aureus subsp. aureus N315 FIG   hypothetical protein
fig|196620.5.peg.158 Staphylococcus aureus subsp. aureus MW2 FIG   hypothetical protein
fig|418127.6.peg.168 Staphylococcus aureus subsp. aureus Mu3 FIG   hypothetical protein
fig|585891.3.peg.169 Staphylococcus aureus subsp. aureus Mu50-omega FIG   hypothetical protein
fig|703339.3.peg.172 Staphylococcus aureus 04-02981 FIG   hypothetical protein
gi|13700085 Staphylococcus aureus subsp. aureus N315 NCBI   hypothetical protein
gi|14245936 Staphylococcus aureus subsp. aureus Mu50 NCBI   hypothetical protein
gi|156720634 Staphylococcus aureus subsp. aureus Mu3 NCBI   hypothetical protein
gi|156978499 Staphylococcus aureus subsp. aureus Mu3 NCBI   hypothetical protein SAHV_0168
gi|15923159 Staphylococcus aureus subsp. aureus Mu50 NCBI   hypothetical protein SAV0169
gi|15925873 Staphylococcus aureus subsp. aureus N315 NCBI   hypothetical protein SAS005
img|637091764 Staphylococcus aureus aureus N315 IMG   hypothetical protein
img|637098668 Staphylococcus aureus aureus Mu50 IMG   hypothetical protein
img|640902890 Staphylococcus aureus aureus Mu3 IMG   hypothetical protein
kegg|sau:SAS005   KEGG   hypothetical protein
kegg|sav:SAV0169   KEGG   hypothetical protein
kegg|saw:SAHV_0168 Staphylococcus aureus subsp. aureus Mu3 KEGG   hypothetical protein
ref|NP_370693.1 Staphylococcus aureus subsp. aureus Mu50 RefSeq   hypothetical protein SAV0169
ref|NP_373406.1 Staphylococcus aureus subsp. aureus N315 RefSeq   hypothetical protein SAS005
ref|YP_001440758.1 Staphylococcus aureus subsp. aureus Mu3 RefSeq   hypothetical protein SAHV_0168
tr|A7WXF2 Staphylococcus aureus (strain Mu3 / ATCC 700698) TrEMBL   Putative uncharacterized protein
tr|Q7A823 Staphylococcus aureus (strain N315) TrEMBL   Putative uncharacterized protein SAS005
tr|Q99X52 Staphylococcus aureus (strain Mu50 / ATCC 700699) TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search