The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki] [GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]
|
![]() |
Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
155 | 173533 | 174657 | 1125 | + | ![]() |
![]() |
15 | 1: 2 | dlit(15778500) | UDP-N-acetyl-L-fucosamine synthase (EC 5.1.3.28) | gene_name|capG, locus|SA0150, protein_id|NP_373392.1, gi|15925859, geneID|1122925 | |
156 | 174660 | 175286 | 627 | + | 2 | ![]() |
Capsular polysaccharide synthesis enzyme Cap5H; O-acetyl transferase | gene_name|capH, locus|SA0151, protein_id|NP_373393.1, gi|15925860, geneID|1122926 | ||||
157 | 175291 | 176400 | 1110 | + | 4 | ![]() |
![]() |
7 | Capsular polysaccharide synthesis enzyme CapI | gene_name|capI, locus|SA0152, protein_id|NP_373394.1, gi|15925861, geneID|1122927 | ||
158 | 176414 | 177580 | 1167 | + | 13 | ![]() |
Capsular polysaccharide synthesis enzyme Cap5J | gene_name|capJ, locus|SA0153, protein_id|NP_373395.1, gi|15925862, geneID|1122928 | ||||
159 | 177573 | 178778 | 1206 | + | -8 | ![]() |
Capsular polysaccharide synthesis enzyme Cap5K | gene_name|capK, locus|SA0154, protein_id|NP_373396.1, gi|15925863, geneID|1122929 | ||||
160 | 178779 | 179984 | 1206 | + | 0 | ![]() |
![]() |
Capsular polysaccharide synthesis enzyme CapL | gene_name|capL, locus|SA0155, protein_id|NP_373397.1, gi|15925864, geneID|1122930 | |||
161 | 179995 | 180552 | 558 | + | 10 | ![]() |
![]() |
6 | Capsular polysaccharide synthesis enzyme CapM | gene_name|capM, locus|SA0156, protein_id|NP_373398.1, gi|15925865, geneID|1122931 | ||
162 | 180552 | 181439 | 888 | + | -1 | ![]() |
Capsular polysaccharide synthesis enzyme CapN | gene_name|capN, locus|SA0157, protein_id|NP_373399.1, gi|15925866, geneID|1122932 | ||||
163 | 181493 | 182755 | 1263 | + | 53 | ![]() |
dlit(21454499) | UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.336) | gene_name|capO, locus|SA0158, protein_id|NP_373400.1, gi|15925867, geneID|1122933 | |||
164 | 182832 | 183977 | 1146 | + | 76 | ![]() |
Capsular polysaccharide synthesis enzyme Cap8P | gene_name|capP, locus|SA0159, protein_id|NP_373401.1, gi|15925868, geneID|1122934 | ||||
165 | 184368 | 184042 | 327 | - | 64 | ![]() |
1: 1 | dlit(14570922) dlit(15520015) |
Heme-degrading monooxygenase, staphylobilin-producing (EC 1.14.99.48) # IsdI | locus|SA0160, protein_id|NP_373402.1, gi|15925869, geneID|1122935 | ||
166 | 184758 | 184375 | 384 | - | 6 | ![]() |
1: 1 | Inner membrane protein YbaN | locus|SA0161, protein_id|NP_373403.1, gi|15925870, geneID|1122936 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
GO:0009058 | P:biosynthetic process | |||
GO:0016740 | F:transferase activity | |||
cmr|NT01SA0164 | Staphylococcus aureus N315 | cap5L protein/glycosyltransferase, putative | ||
cmr|NT02SA0157 | Staphylococcus aureus Mu50 | capsular polysaccharide synthesis enzyme Cap5L | ||
dbj|BAB41375.1 | Staphylococcus aureus subsp. aureus N315 | capsular polysaccharide synthesis enzyme Cap5L | ||
dbj|BAB56322.1 | Staphylococcus aureus subsp. aureus Mu50 | capsular polysaccharide synthesis enzyme Cap5L | ||
dbj|BAF77042.1 | Staphylococcus aureus subsp. aureus Mu3 | capsular polysaccharide synthesis enzyme Cap5L | ||
fig|158878.1.peg.160 | Staphylococcus aureus subsp. aureus Mu50 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|158878.14.peg.158 | Staphylococcus aureus subsp. aureus Mu50 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|158879.1.peg.158 | Staphylococcus aureus subsp. aureus N315 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|359786.13.peg.186 | Staphylococcus aureus subsp. aureus JH9 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|359786.3.peg.1130 | Staphylococcus aureus subsp. aureus JH9 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|359787.11.peg.183 | Staphylococcus aureus subsp. aureus JH1 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|359787.3.peg.2006 | Staphylococcus aureus subsp. aureus JH1 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|418127.4.peg.143 | Staphylococcus aureus subsp. aureus Mu3 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|418127.6.peg.157 | Staphylococcus aureus subsp. aureus Mu3 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|505321.3.peg.1841 | Staphylococcus aureus subsp. aureus str. CF-Marseille | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553565.3.peg.2478 | Staphylococcus aureus A5937 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553568.3.peg.793 | Staphylococcus aureus A6224 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553571.3.peg.2063 | Staphylococcus aureus A6300 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553573.3.peg.1954 | Staphylococcus aureus A8115 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553574.3.peg.1719 | Staphylococcus aureus A8117 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553577.3.peg.834 | Staphylococcus aureus A8796 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553581.3.peg.2085 | Staphylococcus aureus A9299 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553588.3.peg.1471 | Staphylococcus aureus A9719 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553592.3.peg.848 | Staphylococcus aureus A9763 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553596.3.peg.901 | Staphylococcus aureus A9781 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|553601.3.peg.23 | Staphylococcus aureus A10102 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|680649.3.peg.1632 | Staphylococcus aureus subsp. aureus MR1 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|681288.4.peg.127 | Staphylococcus aureus subsp. aureus ED98 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
fig|703339.3.peg.161 | Staphylococcus aureus 04-02981 | FIG | Capsular polysaccharide synthesis enzyme CapL | |
gb|AAC46095.1 | Staphylococcus aureus | Cap5L | ||
gb|ABQ47953.1 | Staphylococcus aureus subsp. aureus JH9 | glycosyl transferase, group 1 | ||
gb|ABR51013.1 | Staphylococcus aureus subsp. aureus JH1 | glycosyl transferase group 1 | ||
gb|EEV26337.1 | Staphylococcus aureus A9781 | glycosyl transferase | ||
gb|EEV65035.1 | Staphylococcus aureus A9763 | glycosyl transferase | ||
gb|EEV67003.1 | Staphylococcus aureus A9719 | glycosyl transferase group 1 | ||
gb|EEV71779.1 | Staphylococcus aureus A9299 | glycosyl transferase group 1 | ||
gb|EEV74349.1 | Staphylococcus aureus A8115 | glycosyl transferase group 1 | ||
gb|EEV76987.1 | Staphylococcus aureus A6300 | glycosyl transferase | ||
gb|EEV80998.1 | Staphylococcus aureus A6224 | capsular polysaccharide synthesis enzyme Cap5L | ||
gb|EEV84697.1 | Staphylococcus aureus A5937 | glycosyl transferase group 1 | ||
gi|13700076 | Staphylococcus aureus subsp. aureus N315 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|14245927 | Staphylococcus aureus subsp. aureus Mu50 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|147739655 | Staphylococcus aureus subsp. aureus JH9 | NCBI | glycosyl transferase, group 1 | |
gi|148266586 | Staphylococcus aureus subsp. aureus JH9 | NCBI | glycosyl transferase, group 1 | |
gi|149945077 | Staphylococcus aureus subsp. aureus JH1 | NCBI | glycosyl transferase group 1 | |
gi|150392625 | Staphylococcus aureus subsp. aureus JH1 | NCBI | glycosyl transferase group 1 | |
gi|156720625 | Staphylococcus aureus subsp. aureus Mu3 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|156978490 | Staphylococcus aureus subsp. aureus Mu3 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|15923150 | Staphylococcus aureus subsp. aureus Mu50 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|15925864 | Staphylococcus aureus subsp. aureus N315 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|1773351 | Staphylococcus aureus | NCBI | Cap5L | |
gi|253316308 | Staphylococcus aureus subsp. aureus str. CF-Marseille | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|255004957 | Staphylococcus aureus subsp. aureus Mu50-omega | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|257787997 | Staphylococcus aureus A9781 | NCBI | glycosyl transferase | |
gi|257794025 | Staphylococcus aureus A9781 | NCBI | glycosyl transferase | |
gi|257840576 | Staphylococcus aureus A9763 | NCBI | glycosyl transferase | |
gi|257842581 | Staphylococcus aureus A9719 | NCBI | glycosyl transferase group 1 | |
gi|257847783 | Staphylococcus aureus A9299 | NCBI | glycosyl transferase group 1 | |
gi|257850401 | Staphylococcus aureus A8115 | NCBI | glycosyl transferase group 1 | |
gi|257854034 | Staphylococcus aureus A6300 | NCBI | glycosyl transferase | |
gi|257858110 | Staphylococcus aureus A6224 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|257861924 | Staphylococcus aureus A5937 | NCBI | glycosyl transferase group 1 | |
gi|258408567 | Staphylococcus aureus A9763 | NCBI | glycosyl transferase | |
gi|258421157 | Staphylococcus aureus A9719 | NCBI | glycosyl transferase group 1 | |
gi|258438907 | Staphylococcus aureus A9299 | NCBI | glycosyl transferase group 1 | |
gi|258444142 | Staphylococcus aureus A8115 | NCBI | glycosyl transferase group 1 | |
gi|258447021 | Staphylococcus aureus A6300 | NCBI | glycosyl transferase | |
gi|258448479 | Staphylococcus aureus A6224 | NCBI | capsular polysaccharide synthesis enzyme Cap5L | |
gi|258455712 | Staphylococcus aureus A5937 | NCBI | glycosyl transferase group 1 | |
img|637091755 | Staphylococcus aureus aureus N315 | IMG | capsular polysaccharide synthesis enzyme Cap5L | |
img|637098659 | Staphylococcus aureus aureus Mu50 | IMG | capsular polysaccharide synthesis enzyme Cap5L | |
img|639108494 | Staphylococcus aureus aureus JH1 | IMG | Glycosyl transferase, group 1 | |
img|640564476 | Staphylococcus aureus aureus JH9 | IMG | glycosyl transferase, group 1 | |
img|640778221 | Staphylococcus aureus aureus JH1 | IMG | glycosyl transferase group 1 | |
img|640902881 | Staphylococcus aureus aureus Mu3 | IMG | capsular polysaccharide synthesis enzyme Cap5L | |
kegg|sah:SaurJH1_0151 | Staphylococcus aureus subsp. aureus JH1 | KEGG | glycosyl transferase group 1 | |
kegg|saj:SaurJH9_0146 | Staphylococcus aureus subsp. aureus JH9 | KEGG | glycosyl transferase, group 1 | |
kegg|sau:SA0155 | KEGG | capsular polysaccharide synthesis enzyme Cap5L | ||
kegg|sav:SAV0160 | KEGG | capsular polysaccharide synthesis enzyme Cap5L | ||
kegg|saw:SAHV_0159 | Staphylococcus aureus subsp. aureus Mu3 | KEGG | capsular polysaccharide synthesis enzyme Cap5L | |
ref|NP_370684.1 | Staphylococcus aureus subsp. aureus Mu50 | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|NP_373397.1 | Staphylococcus aureus subsp. aureus N315 | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|YP_001245529.1 | Staphylococcus aureus subsp. aureus JH9 | RefSeq | glycosyl transferase, group 1 | |
ref|YP_001315300.1 | Staphylococcus aureus subsp. aureus JH1 | RefSeq | glycosyl transferase group 1 | |
ref|YP_001440749.1 | Staphylococcus aureus subsp. aureus Mu3 | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|ZP_04839521.1 | Staphylococcus aureus subsp. aureus str. CF-Marseille | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|ZP_05143558.2 | Staphylococcus aureus subsp. aureus Mu50-omega | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|ZP_05643004.1 | Staphylococcus aureus A9781 | RefSeq | glycosyl transferase | |
ref|ZP_05680852.1 | Staphylococcus aureus A9763 | RefSeq | glycosyl transferase | |
ref|ZP_05684084.1 | Staphylococcus aureus A9719 | RefSeq | glycosyl transferase group 1 | |
ref|ZP_05689998.1 | Staphylococcus aureus A9299 | RefSeq | glycosyl transferase group 1 | |
ref|ZP_05692476.1 | Staphylococcus aureus A8115 | RefSeq | glycosyl transferase group 1 | |
ref|ZP_05695171.1 | Staphylococcus aureus A6300 | RefSeq | glycosyl transferase | |
ref|ZP_05696592.1 | Staphylococcus aureus A6224 | RefSeq | capsular polysaccharide synthesis enzyme Cap5L | |
ref|ZP_05703667.1 | Staphylococcus aureus A5937 | RefSeq | glycosyl transferase group 1 | |
tr|A5IP30 | Staphylococcus aureus (strain JH9) | TrEMBL | Glycosyl transferase, group 1 | |
tr|A6TXU5 | Staphylococcus aureus (strain JH1) | TrEMBL | Glycosyl transferase group 1 | |
tr|A7WXD8 | Staphylococcus aureus (strain Mu3 / ATCC 700698) | TrEMBL | Capsular polysaccharide synthesis enzyme Cap5L | |
tr|P95705 | Staphylococcus aureus | TrEMBL | Cap5L | |
tr|Q7A2Y1 | Staphylococcus aureus (strain Mu50 / ATCC 700699) | TrEMBL | Capsular polysaccharide synthesis enzyme Cap5L | |
tr|Q7A832 | Staphylococcus aureus (strain N315) | TrEMBL | Capsular polysaccharide synthesis enzyme Cap5L |
Score | Peg | Function |
---|---|---|
15 | fig|158879.11.peg.155 | UDP-N-acetyl-L-fucosamine synthase (EC 5.1.3.28) |
7 | fig|158879.11.peg.157 | Capsular polysaccharide synthesis enzyme CapI |
6 | fig|158879.11.peg.161 | Capsular polysaccharide synthesis enzyme CapM |
Key Link Explains Key |
Value |
---|
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
> Show tool descriptions