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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|155920.4.peg.3352: Xylella fastidiosa subsp. sandyi Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: Phage protein
Translate Function Assignments


Context on contig NZ_AAAM03000044 from base 2594 to 14024 (11431 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
3347 2594 3856 1263 +           Phage protein locus|XfasoDRAFT_2201, protein_id|ZP_00682454.1, gi|71900319
3348 3856 4422 567 + -1         Phage protein locus|XfasoDRAFT_2202, protein_id|ZP_00682455.1, gi|71900320
3349 4491 5657 1167 + 68         Phage antirepressor protein locus|XfasoDRAFT_2203, protein_id|ZP_00682456.1, gi|71900321, InterPro:IPR003497
3350 5659 7839 2181 + 1         phage-related DNA polymerase locus|XfasoDRAFT_2204, protein_id|ZP_00682457.1, gi|71900322, InterPro:IPR001098
3351 7836 8114 279 + -4         Phage protein locus|XfasoDRAFT_2205, protein_id|ZP_00682458.1, gi|71900323
3352 8442 8116 327 - 1         Phage protein locus|XfasoDRAFT_2206, protein_id|ZP_00682459.1, gi|71900324
3353 8527 9945 1419 + 84         DNA helicase, phage-associated locus|XfasoDRAFT_2207, protein_id|ZP_00682460.1, gi|71900325, InterPro:IPR000330, InterPro:IPR000566, InterPro:IPR001410
3354 9958 10182 225 + 12         hypothetical protein  
rna.54 11519 11445 75 - 1262     1: 5   tRNA-Val-CAC  
3356 11848 11579 270 - 59         Type IV pilus biogenesis protein PilZ locus|XfasoDRAFT_2209, protein_id|ZP_00682462.1, gi|71900327, InterPro:IPR009875
3357 12924 11932 993 - 83     2: 6 4   DNA polymerase III delta prime subunit (EC 2.7.7.7) locus|XfasoDRAFT_2210, protein_id|ZP_00682463.1, gi|71900328, InterPro:IPR000449, InterPro:IPR003439
3358 14024 12921 1104 - -4     3: 1 2 3   FIG004453: protein YceG like locus|XfasoDRAFT_2211, protein_id|ZP_00682464.1, gi|71900329, InterPro:IPR003770

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.4.peg.3352 Phage protein
MTSVAFDTLKFANRLKTAGVPAAHAEAEAEALAEVLETNLQDLATKRDLRELELKLESKI
DKGFADVHKGFVDVHKGFAEIKGEMLLLKWMFGVIVTSLVALIIKAFF

MD5 = 03017bb04527f4e11ec6a9951425869c


  DNA Sequence

>fig|155920.4.peg.3352 Phage protein
gtgacatccgtagcgttcgatacgcttaaatttgcgaaccggctgaaaacggcaggggtt
cctgcggcccatgcggaggcggaagccgaagccttggcggaagtgctagaaacgaatttg
caagaccttgcgacaaagcgagatttgcgggagctggaattaaagctcgaatcaaaaata
gataaagggttcgctgatgtacataaagggttcgttgatgtacataaagggttcgctgaa
ataaaaggcgaaatgctgctactaaaatggatgttcggtgtgatcgtcactagcctggtg
gcactgatcatcaaagcgtttttctga


  DNA with Flanking Sequence

>fig|155920.4.peg.3352 Phage protein
gttccttgccgcagccggaaccctttcagcttggagcactcatcggcgaccaccatacgg
aacggccaacggtccttgtaaaactccactaaccatttcagattgtcgtaattaatgcag
tagatatccgcgtcctgctccaaggcgtggcgacgtgccgccgcactacccacgaccacg
gacacccgcagatggcgcaaatgggggaacttggccacctcatccggccatgtcgtggca
gcaacgcgcagcggagcaatcaccaaaataggcgcaatgtcttcgaccaccaggagcaca
tctaacgccgtcagcgttgccaccgtctttcctaaacccatgggcacgaatagattgcag
cgtgggtgcgtcaggatgaaatcaacgatggtgtgttggtaggggcgcaggttcatgcca
acgctccgtgcagcgcttcaggatgggcgggaggcgcactgctatactcgccatcacatg
gagctaaagcgggggtatgtgtgacatccgtagcgttcgatacgcttaaatttgcgaacc
ggctgaaaacggcaggggttcctgcggcccatgcggaggcggaagccgaagccttggcgg
aagtgctagaaacgaatttgcaagaccttgcgacaaagcgagatttgcgggagctggaat
taaagctcgaatcaaaaatagataaagggttcgctgatgtacataaagggttcgttgatg
tacataaagggttcgctgaaataaaaggcgaaatgctgctactaaaatggatgttcggtg
tgatcgtcactagcctggtggcactgatcatcaaagcgtttttctgagtcacgccagcac
ctcatccacgcctttaaaggaatcgaccacgaccacgcgctggcccatgcgacgcaggcg
ctcatgctcacggacttgatgcggtgtgcactgctgacctggggctttgagttccaccca
cagggtgcgcccctcgggcagcatggcgatacggtccggcgcaccgtggcggccacccca
tttcaccttgcggatttcaccgcccttggccctgacctgggccactaaatagcgttcgat
cgtccgctcacgggggatgttcatcattgcttcctataccggtgggtttggaagccttcc
gccgctaagggcaacccctgcgcccagggcggcggtgtcgccatgagtgcggccaagtgc
gcggcattgaaagcggcgttgtcatcggcttcggtaataatttcgtcgtgcacggttaaa
acgatctgataccccgctgcttcaatcgcaggcatgcaggcggccaacacgtcgcggctg
acggctt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|155919.4.peg.102 Xylella fastidiosa Dixon FIG   Phage protein
gb|EAO13941.1 Xylella fastidiosa Dixon     phage-related protein
gb|EAO31995.1 Xylella fastidiosa Ann-1     phage-related protein
gi|71164227 Xylella fastidiosa Dixon NCBI   phage-related protein
gi|71274495 Xylella fastidiosa Dixon NCBI   phage-related protein
gi|71729899 Xylella fastidiosa Ann-1 NCBI   phage-related protein
gi|71900324 Xylella fastidiosa Ann-1 NCBI   phage-related protein
img|638353202 Xylella fastidiosa Dixon IMG   phage-related protein
img|638358245 Xylella fastidiosa Ann-1 IMG   phage-related protein
ref|ZP_00650783.1 Xylella fastidiosa Dixon RefSeq   phage-related protein
ref|ZP_00682459.1 Xylella fastidiosa Ann-1 RefSeq   phage-related protein
tr|Q3R446 Xylella fastidiosa Ann-1 TrEMBL   Phage-related protein
tr|Q3RI88 Xylella fastidiosa Dixon TrEMBL   Phage-related protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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