Protein Page for fig|155920.4.peg.3350

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|155920.4.peg.3350: Xylella fastidiosa subsp. sandyi Ann-1

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NCBI Taxonomy Id: 155920

Current Assignment: phage-related DNA polymerase

Translate Function Assignments

Context on contig NZ_AAAM03000044 from base 600 to 12924 (12325 bp)


Fid	Start	End	Size (nt)		Gap	Fc-sc	SS	Function	Aliases
3341	600	1061	462	+				conserved hypothetical protein	locus\|XfasoDRAFT_2197, protein_id\|ZP_00682450.1, gi\|71900315
3342	1058	1465	408	+	-4			FIG01217517: hypothetical protein	locus\|XfasoDRAFT_2198, protein_id\|ZP_00682451.1, gi\|71900316
3343	1462	1653	192	+	-4			FIG01218187: hypothetical protein	locus\|XfasoDRAFT_2199, protein_id\|ZP_00682452.1, gi\|71900317
3344	1677	1868	192	+	23			conserved hypothetical protein	locus\|XfasoDRAFT_2227, protein_id\|ZP_00682480.1, gi\|71900345
3345	1900	2094	195	+	31			FIG01217231: hypothetical protein	locus\|XfasoDRAFT_2228, protein_id\|ZP_00682481.1, gi\|71900346
3346	2151	2582	432	+	56			FIG01217753: hypothetical protein	locus\|XfasoDRAFT_2200, protein_id\|ZP_00682453.1, gi\|71900318
3347	2594	3856	1263	+	11	12		Phage protein	locus\|XfasoDRAFT_2201, protein_id\|ZP_00682454.1, gi\|71900319
3348	3856	4422	567	+	-1	11		Phage protein	locus\|XfasoDRAFT_2202, protein_id\|ZP_00682455.1, gi\|71900320
3349	4491	5657	1167	+	68			Phage antirepressor protein	locus\|XfasoDRAFT_2203, protein_id\|ZP_00682456.1, gi\|71900321, InterPro:IPR003497
3350	5659	7839	2181	+	1			phage-related DNA polymerase	locus\|XfasoDRAFT_2204, protein_id\|ZP_00682457.1, gi\|71900322, InterPro:IPR001098
3351	7836	8114	279	+	-4	6		Phage protein	locus\|XfasoDRAFT_2205, protein_id\|ZP_00682458.1, gi\|71900323
3352	8442	8116	327	-	1			Phage protein	locus\|XfasoDRAFT_2206, protein_id\|ZP_00682459.1, gi\|71900324
3353	8527	9945	1419	+	84	10		DNA helicase, phage-associated	locus\|XfasoDRAFT_2207, protein_id\|ZP_00682460.1, gi\|71900325, InterPro:IPR000330, InterPro:IPR000566, InterPro:IPR001410
3354	9958	10182	225	+	12			hypothetical protein
rna.54	11519	11445	75	-	1262		1: 3	tRNA-Val-CAC
3356	11848	11579	270	-	59			Type IV pilus biogenesis protein PilZ	locus\|XfasoDRAFT_2209, protein_id\|ZP_00682462.1, gi\|71900327, InterPro:IPR009875
3357	12924	11932	993	-	83		2: 1 2	DNA polymerase III delta prime subunit (EC 2.7.7.7)	locus\|XfasoDRAFT_2210, protein_id\|ZP_00682463.1, gi\|71900328, InterPro:IPR000449, InterPro:IPR003439

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|155920.4.peg.3350 phage-related DNA polymerase
MATAQPPAPILWGDLETYSPVPIAHGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMP
EELSAALHNPAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSMAQALAHSLPGALGTLCEL
LRVPVEQAKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVV
KRLPSHNYTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVV
QAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKY
QALLNCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCV
DLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQ
GVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQR
QIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRP
TFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHTCCGITMQYSRA
WLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVL
AACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQT
HRYRKQ

MD5 = 682e295f671df9fa741ab838d8367bb8

DNA Sequence

>fig|155920.4.peg.3350 phage-related DNA polymerase
atggctaccgcgcagccacccgcacccatcctatggggggacctagagacgtactccccc
gtaccgattgcccatggcgtgcatgcgtatgccgagcaagccgagctgttgctgtttgct
tacgcgatcggcaacggtccggtgcaggtgtgggactgcacagccacggcaacgatgcct
gaggagctgtcggctgcgttgcacaaccccgcggtgctgctgtacttccacaactcccat
tttgaccgaaccgtgctacgccattgcggcatcgacatccccttggagcgctggcgcgat
tcgatggcccaggccttggcccattcgctgcctggggcgctaggcacgttatgcgagctg
ctgcgcgttcctgtggagcaagccaaggccaaggacggcaaacggctcgttgcactgttt
tgcaaaccgcgccccgcccactgcacgttgcgccgtgccacacgtgacacccatccgacc
gagtgggcgcagtttgtggagtacgccaggcgcgatgtggcagccatgcgggacgtggtg
aagcgcttgccgtcccacaactacacgggggcggagctggcgctgtggtttctggaccaa
actattaatgaccgaggcgttatggtcgatacagacttagcccaggccgccatcggcgct
gtggaacgcgccaagcaagcactggccgagcgcaccagtgacctcacagcaggagtggtg
caggcggcgacccagcgcgatgcactgttgcaccacctgagcaccgagcacggcgtggcg
ttgccggacatgcagcaacacacggtagagcgttgtcttgacgatccgctgttgccagag
acggtgcgggaactgctgtccatccgcaggcaagccagcaccaccagcaccgctaagtat
caggcgctgctgaactgcaccagtggcgatggccgtctgcgcggcacactgcaatttaac
ggggccagccgcaccggacgttgggcggggcggctgtttcagccgcacaacctgccccgc
cccacgctcagccagccagtgatcgcggttggcattgatgccatgaaagccggttgtgtg
gatttggtctttgacgatgtcatggcgctgaccagcagcgcgctacgcagttgtctgatt
gcgccaacacataaaaagctggtcgtggccgatctgtccaacattgaaggccgcgtgttg
gcgtggctggccggtgaaacccccaagctgcacgcgtttcgtgattttgatacgtgccaa
ggggtggacggtacatggcacagcggcgaggccatcactcacggtgcgctgcgcggcgcg
ccaatcaccctgcaacgtaatgccgagcacgagcctatccgccaaggggacgacatttac
aagcgcgcctacgctcattcgttcgggatagcgccccaggccgtgaccaaggagcaacgc
cagattggcaaagtgcaggaattggcattggggtatggcggcggtgtcggggcctttgcc
gcctttgcggccatgtatcacatagatttggaggcgatggccgagcaggccgccttacca
cccctgctgcttcaggaggccgtggaagcgctccagtggacgaaggcgaaccaacgtccc
actttcggcctctcagatcgcgcatggttggcgtgcgatgtgtttaagcgcgcatggcgc
aacgcgcatccggccattgcggcgttttggaaggcgttgcagttcgcggccacagacgcc
atccgccaccccgaaacggcgcacacctgctgcggtatcacaatgcagtacagccgtgca
tggctgcggatgcatctgccgtcggggcgggtgctttactacgccgctcccagagtcgat
gagcacggcgcgctgtcctacatgggcacgcatccgatgacgcgaaaatggacgcgcatc
accacctacggcggcaagctggtcgagaacatcacccaagccgtcagccgcgacgtgttg
gccgcctgcatgcctgcgattgaagcagcggggtatcagatcgttttaaccgtgcacgac
gaaattattaccgaagccgatgacaacgccgctttcaatgccgcgcacttggccgcactc
atggcgacaccgccgccctgggcgcaggggttgcccttagcggcggaaggcttccaaacc
caccggtataggaagcaatga

DNA with Flanking Sequence

>fig|155920.4.peg.3350 phage-related DNA polymerase
caagcgttttaagcgttgggtgacgagcgaagtcctgcccaccctgcgcaagacaggcac
ctactccacaccaggagcactgcccaccttgcctgggccgacacaggatcgcattgccgc
actcctattaatcggccaatacatctccacagtgccaggggtgaagccagggattgccgc
agcggcaacgctggcctgcatcaaaagcaatacgaatttaacgaccgaagagatacgccg
tgcgttgcctgcactgcgggacccgctttgcatgctcaacgccacgcaactaggtaagca
gctgcattgctcggccaaggcggcgaaccaattattagcctccagtggctttcagttccg
taatgaacgcgacgcgtgggaattaaccgaagccggtcgcgtggggggtgaagcgattcc
gtactcacgcaacgggcacagcagctaccaaattctttggaacccaacggtgcttgactc
gctgaaggtagccgcctgagatggctaccgcgcagccacccgcacccatcctatgggggg
acctagagacgtactcccccgtaccgattgcccatggcgtgcatgcgtatgccgagcaag
ccgagctgttgctgtttgcttacgcgatcggcaacggtccggtgcaggtgtgggactgca
cagccacggcaacgatgcctgaggagctgtcggctgcgttgcacaaccccgcggtgctgc
tgtacttccacaactcccattttgaccgaaccgtgctacgccattgcggcatcgacatcc
ccttggagcgctggcgcgattcgatggcccaggccttggcccattcgctgcctggggcgc
taggcacgttatgcgagctgctgcgcgttcctgtggagcaagccaaggccaaggacggca
aacggctcgttgcactgttttgcaaaccgcgccccgcccactgcacgttgcgccgtgcca
cacgtgacacccatccgaccgagtgggcgcagtttgtggagtacgccaggcgcgatgtgg
cagccatgcgggacgtggtgaagcgcttgccgtcccacaactacacgggggcggagctgg
cgctgtggtttctggaccaaactattaatgaccgaggcgttatggtcgatacagacttag
cccaggccgccatcggcgctgtggaacgcgccaagcaagcactggccgagcgcaccagtg
acctcacagcaggagtggtgcaggcggcgacccagcgcgatgcactgttgcaccacctga
gcaccgagcacggcgtggcgttgccggacatgcagcaacacacggtagagcgttgtcttg
acgatccgctgttgccagagacggtgcgggaactgctgtccatccgcaggcaagccagca
ccaccagcaccgctaagtatcaggcgctgctgaactgcaccagtggcgatggccgtctgc
gcggcacactgcaatttaacggggccagccgcaccggacgttgggcggggcggctgtttc
agccgcacaacctgccccgccccacgctcagccagccagtgatcgcggttggcattgatg
ccatgaaagccggttgtgtggatttggtctttgacgatgtcatggcgctgaccagcagcg
cgctacgcagttgtctgattgcgccaacacataaaaagctggtcgtggccgatctgtcca
acattgaaggccgcgtgttggcgtggctggccggtgaaacccccaagctgcacgcgtttc
gtgattttgatacgtgccaaggggtggacggtacatggcacagcggcgaggccatcactc
acggtgcgctgcgcggcgcgccaatcaccctgcaacgtaatgccgagcacgagcctatcc
gccaaggggacgacatttacaagcgcgcctacgctcattcgttcgggatagcgccccagg
ccgtgaccaaggagcaacgccagattggcaaagtgcaggaattggcattggggtatggcg
gcggtgtcggggcctttgccgcctttgcggccatgtatcacatagatttggaggcgatgg
ccgagcaggccgccttaccacccctgctgcttcaggaggccgtggaagcgctccagtgga
cgaaggcgaaccaacgtcccactttcggcctctcagatcgcgcatggttggcgtgcgatg
tgtttaagcgcgcatggcgcaacgcgcatccggccattgcggcgttttggaaggcgttgc
agttcgcggccacagacgccatccgccaccccgaaacggcgcacacctgctgcggtatca
caatgcagtacagccgtgcatggctgcggatgcatctgccgtcggggcgggtgctttact
acgccgctcccagagtcgatgagcacggcgcgctgtcctacatgggcacgcatccgatga
cgcgaaaatggacgcgcatcaccacctacggcggcaagctggtcgagaacatcacccaag
ccgtcagccgcgacgtgttggccgcctgcatgcctgcgattgaagcagcggggtatcaga
tcgttttaaccgtgcacgacgaaattattaccgaagccgatgacaacgccgctttcaatg
ccgcgcacttggccgcactcatggcgacaccgccgccctgggcgcaggggttgcccttag
cggcggaaggcttccaaacccaccggtataggaagcaatgatgaacatcccccgtgagcg
gacgatcgaacgctatttagtggcccaggtcagggccaagggcggtgaaatccgcaaggt
gaaatggggtggccgccacggtgcgccggaccgtatcgccatgctgcccgaggggcgcac
cctgtgggtggaactcaaagccccaggtcagcagtgcacaccgcatcaagtccgtgagca
tgagcgcctgcgtcgcatgggccagcgcgtggtcgtggtcgattcctttaaaggcgtgga
tgaggtgctggcgtgactcagaaaaacgctttgatgatcagtgccaccaggctagtgacg
atcacaccgaacatccattttagtagcagcatttcgccttttatttcagcgaacccttta
tgtacatcaacgaaccctttatgtacatcagcgaaccctttatctatttttgattcgagc
tttaattccagctcccgcaaatctcgctttgtcgcaaggtcttgcaaattcgtttctagc
a

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
GO:0003676			F:nucleic acid binding
GO:0003887			F:DNA-directed DNA polymerase activity
fig\|155919.4.peg.2323	Xylella fastidiosa Dixon	FIG	phage-related DNA polymerase
gb\|EAO12599.1	Xylella fastidiosa Dixon		DNA-directed DNA polymerase
gb\|EAO31993.1	Xylella fastidiosa Ann-1		DNA-directed DNA polymerase
gi\|71162875	Xylella fastidiosa Dixon	NCBI	DNA-directed DNA polymerase
gi\|71276267	Xylella fastidiosa Dixon	NCBI	DNA-directed DNA polymerase
gi\|71729897	Xylella fastidiosa Ann-1	NCBI	DNA-directed DNA polymerase
gi\|71900322	Xylella fastidiosa Ann-1	NCBI	DNA-directed DNA polymerase
img\|638354998	Xylella fastidiosa Dixon	IMG	DNA-directed DNA polymerase
img\|638358243	Xylella fastidiosa Ann-1	IMG	DNA-directed DNA polymerase
ref\|ZP_00652545.1	Xylella fastidiosa Dixon	RefSeq	DNA-directed DNA polymerase
ref\|ZP_00682457.1	Xylella fastidiosa Ann-1	RefSeq	DNA-directed DNA polymerase
tr\|Q3R448	Xylella fastidiosa Ann-1	TrEMBL	DNA-directed DNA polymerase
tr\|Q3RD81	Xylella fastidiosa Dixon	TrEMBL	DNA-directed DNA polymerase

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Functional Coupling


Score	Peg	Function
12	fig\|155920.4.peg.3347	Phage protein
11	fig\|155920.4.peg.3348	Phage protein
6	fig\|155920.4.peg.3351	Phage protein
10	fig\|155920.4.peg.3353	DNA helicase, phage-associated

Attributes

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Protein Families

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