The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|155920.4.peg.3349: Xylella fastidiosa subsp. sandyi Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: Phage antirepressor protein
Translate Function Assignments



Context on contig NZ_AAAM03000044 from base 271 to 10182 (9912 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3340 271 603 333 +           hypothetical protein locus|XfasoDRAFT_2196, protein_id|ZP_00682449.1, gi|71900314
3341 600 1061 462 + -4         conserved hypothetical protein locus|XfasoDRAFT_2197, protein_id|ZP_00682450.1, gi|71900315
3342 1058 1465 408 + -4         FIG01217517: hypothetical protein locus|XfasoDRAFT_2198, protein_id|ZP_00682451.1, gi|71900316
3343 1462 1653 192 + -4         FIG01218187: hypothetical protein locus|XfasoDRAFT_2199, protein_id|ZP_00682452.1, gi|71900317
3344 1677 1868 192 + 23         conserved hypothetical protein locus|XfasoDRAFT_2227, protein_id|ZP_00682480.1, gi|71900345
3345 1900 2094 195 + 31         FIG01217231: hypothetical protein locus|XfasoDRAFT_2228, protein_id|ZP_00682481.1, gi|71900346
3346 2151 2582 432 + 56         FIG01217753: hypothetical protein locus|XfasoDRAFT_2200, protein_id|ZP_00682453.1, gi|71900318
3347 2594 3856 1263 + 11         Phage protein locus|XfasoDRAFT_2201, protein_id|ZP_00682454.1, gi|71900319
3348 3856 4422 567 + -1         Phage protein locus|XfasoDRAFT_2202, protein_id|ZP_00682455.1, gi|71900320
3349 4491 5657 1167 + 68         Phage antirepressor protein locus|XfasoDRAFT_2203, protein_id|ZP_00682456.1, gi|71900321, InterPro:IPR003497
3350 5659 7839 2181 + 1         phage-related DNA polymerase locus|XfasoDRAFT_2204, protein_id|ZP_00682457.1, gi|71900322, InterPro:IPR001098
3351 7836 8114 279 + -4         Phage protein locus|XfasoDRAFT_2205, protein_id|ZP_00682458.1, gi|71900323
3352 8442 8116 327 - 1         Phage protein locus|XfasoDRAFT_2206, protein_id|ZP_00682459.1, gi|71900324
3353 8527 9945 1419 + 84         DNA helicase, phage-associated locus|XfasoDRAFT_2207, protein_id|ZP_00682460.1, gi|71900325, InterPro:IPR000330, InterPro:IPR000566, InterPro:IPR001410
3354 9958 10182 225 + 12         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.4.peg.3349 Phage antirepressor protein
MNTPSEFTLQFESHAVRVQLDEHERRWFNANDICTALELLNPCAALAQHVGAENVSKRKT
IDAVGWTKHANYLNESGVYALLIGSTKEAAKRFRQWLTDEALPAAQKAGHHIIPLHSAID
SAPSAPSPFQHTENHTMNAITPFQFESKDVRIQLDEANAPWFNANDVCAVLEFGNPHQAI
ESHVDVEDLQKLEAPTAGGRQRVNHINESGLYSLIMGSTKPAAKRFKRWVTSEVLPTLRK
TGTYSTPGALPTLPGPTQDRIAALLLIGQYISTVPGVKPGIAAAATLACIKSNTNLTTEE
IRRALPALRDPLCMLNATQLGKQLHCSAKAANQLLASSGFQFRNERDAWELTEAGRVGGE
AIPYSRNGHSSYQILWNPTVLDSLKVAA

MD5 = e22fc3862883e1af8c3a578e8f5b4184


  DNA Sequence

>fig|155920.4.peg.3349 Phage antirepressor protein
atgaatacaccctctgagttcactctccagtttgaatcccacgccgtgcgtgtccagctt
gatgaacatgagcggcgatggtttaacgccaatgacatttgcacggcgttggagttgtta
aatccatgtgccgcacttgctcagcatgtgggtgccgagaatgtatcgaaacgcaaaacc
atcgacgccgttgggtggactaagcacgccaactatttgaacgagtcaggggtgtacgcc
ttgctcatcggcagcaccaaagaggcggctaaacgctttagacagtggctgaccgatgaa
gcgctgcccgcagctcaaaaagcagggcatcacatcatccctctgcacagcgcaatcgac
agtgcgccttccgccccaagccccttccaacacacagagaaccacacaatgaacgcaatc
actccattccaattcgaatcaaaagatgtgcgcatccagctcgacgaggccaatgcgccc
tggtttaacgccaatgatgtttgtgccgttctggagtttggtaatccacatcaagccatt
gaatcccacgtggatgtagaggatctccagaagttggaggcccctacagcaggtggccgt
caacgcgttaaccacatcaacgaatctggtttgtactccctgatcatgggcagcacaaaa
cctgcggccaagcgttttaagcgttgggtgacgagcgaagtcctgcccaccctgcgcaag
acaggcacctactccacaccaggagcactgcccaccttgcctgggccgacacaggatcgc
attgccgcactcctattaatcggccaatacatctccacagtgccaggggtgaagccaggg
attgccgcagcggcaacgctggcctgcatcaaaagcaatacgaatttaacgaccgaagag
atacgccgtgcgttgcctgcactgcgggacccgctttgcatgctcaacgccacgcaacta
ggtaagcagctgcattgctcggccaaggcggcgaaccaattattagcctccagtggcttt
cagttccgtaatgaacgcgacgcgtgggaattaaccgaagccggtcgcgtggggggtgaa
gcgattccgtactcacgcaacgggcacagcagctaccaaattctttggaacccaacggtg
cttgactcgctgaaggtagccgcctga


  DNA with Flanking Sequence

>fig|155920.4.peg.3349 Phage antirepressor protein
aaccaggccattgacaagatggccaatgacaaatggggcgttaaggcggcggctcagctt
aaacagatgcgtatgggcgacagagtcgccttgcatgatggcgacctgaaagccagctat
gacgggtttgcagggcacctatacgtctctgcgcgtaacaagtcacggccactggtggtc
gaccgtgaccggaccccgctcaccgcgcaggacggcaggccgtatgccggatgttacgtc
aacgccaacatagaactctgggcgcaggacaacaactacggcaagcggattaacgcctca
ctgggtggcgtgcagttcctgcgtgatggcgaggcgttcgctggaggcggtgtggccagc
gtggaggacttcgaggacctgagcaacgtcgccgagctggtggatgttgaagaagccatg
ccgtgggggtgaaccccgatgtgggagggcgtttcgtcctcccacgccccagctcccctt
atccctgtatggacaacctcatgaatacaccctctgagttcactctccagtttgaatccc
acgccgtgcgtgtccagcttgatgaacatgagcggcgatggtttaacgccaatgacattt
gcacggcgttggagttgttaaatccatgtgccgcacttgctcagcatgtgggtgccgaga
atgtatcgaaacgcaaaaccatcgacgccgttgggtggactaagcacgccaactatttga
acgagtcaggggtgtacgccttgctcatcggcagcaccaaagaggcggctaaacgcttta
gacagtggctgaccgatgaagcgctgcccgcagctcaaaaagcagggcatcacatcatcc
ctctgcacagcgcaatcgacagtgcgccttccgccccaagccccttccaacacacagaga
accacacaatgaacgcaatcactccattccaattcgaatcaaaagatgtgcgcatccagc
tcgacgaggccaatgcgccctggtttaacgccaatgatgtttgtgccgttctggagtttg
gtaatccacatcaagccattgaatcccacgtggatgtagaggatctccagaagttggagg
cccctacagcaggtggccgtcaacgcgttaaccacatcaacgaatctggtttgtactccc
tgatcatgggcagcacaaaacctgcggccaagcgttttaagcgttgggtgacgagcgaag
tcctgcccaccctgcgcaagacaggcacctactccacaccaggagcactgcccaccttgc
ctgggccgacacaggatcgcattgccgcactcctattaatcggccaatacatctccacag
tgccaggggtgaagccagggattgccgcagcggcaacgctggcctgcatcaaaagcaata
cgaatttaacgaccgaagagatacgccgtgcgttgcctgcactgcgggacccgctttgca
tgctcaacgccacgcaactaggtaagcagctgcattgctcggccaaggcggcgaaccaat
tattagcctccagtggctttcagttccgtaatgaacgcgacgcgtgggaattaaccgaag
ccggtcgcgtggggggtgaagcgattccgtactcacgcaacgggcacagcagctaccaaa
ttctttggaacccaacggtgcttgactcgctgaaggtagccgcctgagatggctaccgcg
cagccacccgcacccatcctatggggggacctagagacgtactcccccgtaccgattgcc
catggcgtgcatgcgtatgccgagcaagccgagctgttgctgtttgcttacgcgatcggc
aacggtccggtgcaggtgtgggactgcacagccacggcaacgatgcctgaggagctgtcg
gctgcgttgcacaaccccgcggtgctgctgtacttccacaactcccattttgaccgaacc
gtgctacgccattgcggcatcgacatccccttggagcgctggcgcgattcgatggcccag
gccttggcccattcgctgcctggggcgctaggcacgttatgcgagctgctgcgcgttcct
gtggagcaagccaaggccaaggacggcaaacggctcgttgcactgttttgcaaaccgcgc
cccgcccactgcacgttgcgccgtgccacacgtgacacccatccgaccgagtgggcgcag
tttgtgg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|155919.4.peg.2322 Xylella fastidiosa Dixon FIG   Phage antirepressor protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


Tool Description
General Tools
Psi-Blast NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred Tool for Predicting Transmembrane regions
TMHMM Prediction of transmembrane helices in proteins
Protein Signals for Gram negative bacteria
Gram negative PSORT Prediction of protein localization sites
Gram negative SignalP Predicts the presence and location of signal peptide cleavage sites
Protein Signals for Gram positive bacteria
Gram positive PSORT Prediction of protein localization sites
Gram positive SignalP Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO Subcellular localization predictor at National Chiao Tung University
ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions


FIG search