The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|155920.4.peg.3347: Xylella fastidiosa subsp. sandyi Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: Phage protein
Turn Off Function Translation



Context on contig NZ_AAAM03000044 from base 271 to 9945 (9675 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3340 271 603 333 +           hypothetical protein locus|XfasoDRAFT_2196, protein_id|ZP_00682449.1, gi|71900314
3341 600 1061 462 + -4         conserved hypothetical protein locus|XfasoDRAFT_2197, protein_id|ZP_00682450.1, gi|71900315
3342 1058 1465 408 + -4         FIG01217517: hypothetical protein locus|XfasoDRAFT_2198, protein_id|ZP_00682451.1, gi|71900316
3343 1462 1653 192 + -4         FIG01218187: hypothetical protein locus|XfasoDRAFT_2199, protein_id|ZP_00682452.1, gi|71900317
3344 1677 1868 192 + 23         conserved hypothetical protein locus|XfasoDRAFT_2227, protein_id|ZP_00682480.1, gi|71900345
3345 1900 2094 195 + 31         FIG01217231: hypothetical protein locus|XfasoDRAFT_2228, protein_id|ZP_00682481.1, gi|71900346
3346 2151 2582 432 + 56         FIG01217753: hypothetical protein locus|XfasoDRAFT_2200, protein_id|ZP_00682453.1, gi|71900318
3347 2594 3856 1263 + 11       Phage protein locus|XfasoDRAFT_2201, protein_id|ZP_00682454.1, gi|71900319
3348 3856 4422 567 + -1 10     Phage protein locus|XfasoDRAFT_2202, protein_id|ZP_00682455.1, gi|71900320
3349 4491 5657 1167 + 68         Phage antirepressor protein locus|XfasoDRAFT_2203, protein_id|ZP_00682456.1, gi|71900321, InterPro:IPR003497
3350 5659 7839 2181 + 1 15     phage-related DNA polymerase locus|XfasoDRAFT_2204, protein_id|ZP_00682457.1, gi|71900322, InterPro:IPR001098
3351 7836 8114 279 + -4         Phage protein locus|XfasoDRAFT_2205, protein_id|ZP_00682458.1, gi|71900323
3352 8442 8116 327 - 1         Phage protein locus|XfasoDRAFT_2206, protein_id|ZP_00682459.1, gi|71900324
3353 8527 9945 1419 + 84         DNA helicase, phage-associated locus|XfasoDRAFT_2207, protein_id|ZP_00682460.1, gi|71900325, InterPro:IPR000330, InterPro:IPR000566, InterPro:IPR001410

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.4.peg.3347 Phage protein
MLSPSSAHRWLHCPASVPLTRTCKDDASPFADEGTVAHTVAADALRTGCDASAYVGECHE
VNGHRWEVTAEMAAYVQEYVDYVRAIAGVRLVEQPLRIASITREQGAKGTADVVILAGDE
LTIVDLKYGRGVKVFAEGNEQLQLYALAALQEFAGLEAFQHVRLVIVQPRLGHADEWVRT
LPQMEDFRRKVAQGAARCRAAMWHYNNVGELPSEYFGPAEKPCRFCKAKASCPALATHVL
NTVADDFVDLTKPIVPQLSYAALRTFDNTTLACLFGATELIESWCKSIRDRAAAELLSGQ
PVPGYKVVQGRHGPRRWVDETAAEDALKQLRIKFKDMYDVSLISPTRAEKLYQAGVIGDR
QWPKLQPLIHRAAGTPVVVPTSDKRPPLALQDATDFQDLSDMPIPPLPDTAPSLQSQETP

MD5 = 19a050d043e154605c867bbc283751aa


  DNA Sequence

>fig|155920.4.peg.3347 Phage protein
atgttatccccgagcagtgcgcatcgttggttgcactgtccggcaagcgttccgttaacg
cgcacctgcaaagacgacgctagcccatttgccgatgaaggcaccgtggcccatacggtg
gctgccgacgcattacgcaccggctgcgatgccagcgcgtacgtgggggaatgccatgag
gtaaacggccaccgctgggaagtcaccgcagagatggcggcgtacgtgcaggagtatgtg
gactatgtacgcgccattgcgggggtgcgcctggtcgagcagcccctacgcattgcctcc
attactagggagcaaggcgctaaaggcaccgctgatgtggtgattttagcgggggatgag
ctaaccatcgttgatctcaaatacggcagaggagtcaaagtcttcgccgaaggcaatgag
caattgcagctatatgcgctggcagcgctgcaagaatttgcagggctggaagccttccag
cacgtgcggctagtgatcgtgcaaccacggctcggacatgccgatgagtgggtgcgcacc
ctcccccagatggaggattttaggcggaaagttgcgcaaggcgcggcgcggtgtagggct
gcgatgtggcactacaacaacgtaggcgaattaccttcagagtatttcggccccgcagaa
aaaccatgccgattttgcaaggccaaagcgagctgccctgcgttggccacgcatgtactg
aacacggtggcagatgattttgtcgacctcacaaagcccattgtcccgcagctcagctac
gcggccctgcgcacgtttgacaacaccacgctggcctgcctgtttggcgcaacagagtta
atcgaatcctggtgcaaatctattcgcgacagggcggcagcggagttgctttcaggccag
cccgtgcctggatacaaggtggttcaaggccgacacgggccgcgccgttgggtggatgag
acagccgccgaggacgcgctcaaacagctgcgcatcaaattcaaagacatgtacgacgtg
tctctcatcagccccacgcgtgccgagaaactctaccaggccggagtcattggtgatcgc
cagtggccaaagctccaaccgctcattcatagggcagcagggacgcccgttgttgttccc
acatcggataaacgccccccgctcgcccttcaagacgcgacggatttccaggacttgagc
gacatgcccatccccccactcccagacacagcaccctcacttcaatctcaggagacaccg
taa


  DNA with Flanking Sequence

>fig|155920.4.peg.3347 Phage protein
atgacaacggacaacacatcggaacggaacaacccacacacgagagaaaaaaaacccatg
tttcctatcaccgtcacgattaccgatcaggcccaattaaacgctgtgttagcggtgctt
aacccgccccgcagcacgagcagccccgcgcaacctgtgtttgacgatacaccgcgcagc
gataacgcccctagccctccaccggcggcacctcctcccccaacggatgtggcgcaaccg
gcggccaaccctgctgctgctcagagcacaacggacgttatgagcacgcctgggtatctt
gaggcggcgaaggcgttaacggccctgtctaaagagcttggcaatacatacgccaaagac
gtgttgaagtcatttggcgtggctggcctctctcaaatccctccggagttgtacccaacg
ctgatggagcgcatcgaaggattttacatcgcccacgaacgcggtttgcccttagacggt
gagacatgagccagcacgccatgttatccccgagcagtgcgcatcgttggttgcactgtc
cggcaagcgttccgttaacgcgcacctgcaaagacgacgctagcccatttgccgatgaag
gcaccgtggcccatacggtggctgccgacgcattacgcaccggctgcgatgccagcgcgt
acgtgggggaatgccatgaggtaaacggccaccgctgggaagtcaccgcagagatggcgg
cgtacgtgcaggagtatgtggactatgtacgcgccattgcgggggtgcgcctggtcgagc
agcccctacgcattgcctccattactagggagcaaggcgctaaaggcaccgctgatgtgg
tgattttagcgggggatgagctaaccatcgttgatctcaaatacggcagaggagtcaaag
tcttcgccgaaggcaatgagcaattgcagctatatgcgctggcagcgctgcaagaatttg
cagggctggaagccttccagcacgtgcggctagtgatcgtgcaaccacggctcggacatg
ccgatgagtgggtgcgcaccctcccccagatggaggattttaggcggaaagttgcgcaag
gcgcggcgcggtgtagggctgcgatgtggcactacaacaacgtaggcgaattaccttcag
agtatttcggccccgcagaaaaaccatgccgattttgcaaggccaaagcgagctgccctg
cgttggccacgcatgtactgaacacggtggcagatgattttgtcgacctcacaaagccca
ttgtcccgcagctcagctacgcggccctgcgcacgtttgacaacaccacgctggcctgcc
tgtttggcgcaacagagttaatcgaatcctggtgcaaatctattcgcgacagggcggcag
cggagttgctttcaggccagcccgtgcctggatacaaggtggttcaaggccgacacgggc
cgcgccgttgggtggatgagacagccgccgaggacgcgctcaaacagctgcgcatcaaat
tcaaagacatgtacgacgtgtctctcatcagccccacgcgtgccgagaaactctaccagg
ccggagtcattggtgatcgccagtggccaaagctccaaccgctcattcatagggcagcag
ggacgcccgttgttgttcccacatcggataaacgccccccgctcgcccttcaagacgcga
cggatttccaggacttgagcgacatgcccatccccccactcccagacacagcaccctcac
ttcaatctcaggagacaccgtaatgaaactcaccctaaaaaacgtgcgcttagccttccc
cgtgttgtttgaacccaagaaagtcaatggcgaaggcgaggccgcattctcggcctgctt
cctgattgaccctgccgacccgcaagtcaaagcccttaaccaggccattgacaagatggc
caatgacaaatggggcgttaaggcggcggctcagcttaaacagatgcgtatgggcgacag
agtcgccttgcatgatggcgacctgaaagccagctatgacgggtttgcagggcacctata
cgtctctgcgcgtaacaagtcacggccactggtggtcgaccgtgaccggaccccgctcac
cgcgcaggacggcaggccgtatgccggatgttacgtcaacgccaacatagaactctgggc
gcaggacaacaactacggcaagcggattaacgcctcactgggtggcgtgcagttcctgcg
tgatggcgaggcgttcgctggaggcggtgtggccagcgtggag


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|155919.4.peg.2320 Xylella fastidiosa Dixon FIG   Phage protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function
10 fig|155920.4.peg.3348 Phage protein
15 fig|155920.4.peg.3350 phage-related DNA polymerase


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search