The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|155920.4.peg.3340: Xylella fastidiosa subsp. sandyi Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_AAAM03000044 from base 271 to 5657 (5387 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3340 271 603 333 +           hypothetical protein locus|XfasoDRAFT_2196, protein_id|ZP_00682449.1, gi|71900314
3341 600 1061 462 + -4         conserved hypothetical protein locus|XfasoDRAFT_2197, protein_id|ZP_00682450.1, gi|71900315
3342 1058 1465 408 + -4         FIG01217517: hypothetical protein locus|XfasoDRAFT_2198, protein_id|ZP_00682451.1, gi|71900316
3343 1462 1653 192 + -4         FIG01218187: hypothetical protein locus|XfasoDRAFT_2199, protein_id|ZP_00682452.1, gi|71900317
3344 1677 1868 192 + 23         conserved hypothetical protein locus|XfasoDRAFT_2227, protein_id|ZP_00682480.1, gi|71900345
3345 1900 2094 195 + 31         FIG01217231: hypothetical protein locus|XfasoDRAFT_2228, protein_id|ZP_00682481.1, gi|71900346
3346 2151 2582 432 + 56         FIG01217753: hypothetical protein locus|XfasoDRAFT_2200, protein_id|ZP_00682453.1, gi|71900318
3347 2594 3856 1263 + 11         Phage protein locus|XfasoDRAFT_2201, protein_id|ZP_00682454.1, gi|71900319
3348 3856 4422 567 + -1         Phage protein locus|XfasoDRAFT_2202, protein_id|ZP_00682455.1, gi|71900320
3349 4491 5657 1167 + 68         Phage antirepressor protein locus|XfasoDRAFT_2203, protein_id|ZP_00682456.1, gi|71900321, InterPro:IPR003497

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.4.peg.3340 hypothetical protein
MYNSTDVMTDYFDDDKFTVATTHPLYQQAKAALEAVRNRSAAQLAASKKKRQEKRNAARA
ALEAAKKEACAAYDAAKDQEARDAAFAAARAALATYEAAEAAAESMGVAV

MD5 = af0078f7961c3473329f2c7e9019a021


  DNA Sequence

>fig|155920.4.peg.3340 hypothetical protein
gtgtacaacagcaccgacgtgatgacagattattttgacgacgataagttcactgttgcc
acaacgcatccattgtatcagcaagcgaaagctgcccttgaggcggtgcgtaatcgatct
gcggcgcagctcgctgcatcgaagaaaaaacgacaagaaaagcgtaatgctgctcgtgct
gcgctcgaagccgctaaaaaagaagcgtgtgctgcgtacgacgccgctaaagaccaagaa
gcgcgtgatgctgcttttgctgctgctcgtgctgctttagctacatacgaagccgctgaa
gctgccgctgaaagcatgggggtggccgtatga


  DNA with Flanking Sequence

>fig|155920.4.peg.3340 hypothetical protein
acgacacccgcaaccggcggcacaggggcaggagatatcgaaatgacattaaacgttagc
gagcaagcccagccccaggctagcaaggccttatcagggactcaaaaagcgccattgttt
tattggaacggcattcgggatgagaaaggcgggaagttgcagcatgccgattactcctac
gaaaagccgcacgacagggataactcggaaattagggtaatcgccacgcgttacacacgc
tttagccctttagtgcatgcctgttttaaggtgtacaacagcaccgacgtgatgacagat
tattttgacgacgataagttcactgttgccacaacgcatccattgtatcagcaagcgaaa
gctgcccttgaggcggtgcgtaatcgatctgcggcgcagctcgctgcatcgaagaaaaaa
cgacaagaaaagcgtaatgctgctcgtgctgcgctcgaagccgctaaaaaagaagcgtgt
gctgcgtacgacgccgctaaagaccaagaagcgcgtgatgctgcttttgctgctgctcgt
gctgctttagctacatacgaagccgctgaagctgccgctgaaagcatgggggtggccgta
tgagcaccgcgaccctcgaaaacgtccccaccacagagggcgctaggttcaccaaaatct
acgatgaacacggcgaccacatcattacgcgtgatgaggctaccgggctggagtggctgg
cttggaatctcaacccaagcactaatgagtacggccatgattgtgatgcggcaaaggaat
gccaccgattagacatcggcgcttataacgattggcgcgtgcctacccttgaagaggcgc
tatccgctaatcgcgcagctgcctatctgcgttgggagttaggcccttggatatggactt
gtacgccggataacgatgacccgaggggcgcggcttgggtcgttaaattccgcacagatt
acagctttgcagcatcgcgagcagtgccgcatcacgtccgcgctgtccgtggccagatgc
gtactgacgccactgctacaccaaaggcaggtgcgtcatgactggcattgggtacagcag
ctacaacgacccacgcctgcaac


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search