The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
844 | 39369 | 43934 | 4566 | + | ![]() |
2: 1 2 | ff icw(4) |
Type IV fimbrial biogenesis protein PilY1 | XfasO0858, ZP_00041054.1, gi|22996810, COG: COG3419 | |||
2173 | 43931 | 44386 | 456 | + | -4 | ![]() |
2: 1 2 | ff icw(1) ilit(3141743) ilit(9515697) |
Type IV pilus biogenesis protein PilE | |||
rna.020 | 44491 | 44567 | 77 | + | 104 | ![]() |
tRNA-Asn-GTT | tRNA-Asn-GTT | ||||
845 | 45631 | 44654 | 978 | - | 86 | ![]() |
Phage integrase | XfasO0859, ZP_00041055.1, gi|22996811, COG: COG0582 | ||||
846 | 46308 | 45865 | 444 | - | 233 | ![]() |
4: 3 4 6 5 | ff idu(6) idu(6) idu(6) ilit(8063092) |
Phage ssDNA binding protein | XfasO0860, ZP_00041056.1, gi|22996812, COG: COG0629 | ||
847 | 47079 | 46366 | 714 | - | 57 | ![]() |
Phage DNA-binding antirepressor protein Roi | XfasO0861, ZP_00041057.1, gi|22996813, COG: COG3646 | ||||
848 | 48038 | 47076 | 963 | - | -4 | ![]() |
Phage DNA-binding antirepressor protein Roi | XfasO0862, ZP_00041058.1, gi|22996814, COG: COG3617 | ||||
849 | 49669 | 48035 | 1635 | - | -4 | ![]() |
Phage protein | XfasO0863, ZP_00041059.1, gi|22996815 | ||||
850 | 50229 | 49666 | 564 | - | -4 | ![]() |
Phage recombination protein Bet | XfasO0864, ZP_00041060.1, gi|22996816 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
GO:0003677 | F:DNA binding | |||
fig|155920.4.peg.4086 | Xylella fastidiosa subsp. sandyi Ann-1 | FIG | Phage DNA-binding antirepressor protein Roi | |
gb|EAO31447.1 | Xylella fastidiosa Ann-1 | putative DNA-binding protein (Roi) | ||
gi|71729331 | Xylella fastidiosa Ann-1 | NCBI | putative DNA-binding protein (Roi) | |
gi|71900919 | Xylella fastidiosa Ann-1 | NCBI | putative DNA-binding protein (Roi) | |
img|638358828 | Xylella fastidiosa Ann-1 | IMG | putative DNA-binding protein (Roi) | |
ref|ZP_00683034.1 | Xylella fastidiosa Ann-1 | RefSeq | putative DNA-binding protein (Roi) | |
tr|Q3R2H2 | Xylella fastidiosa Ann-1 | TrEMBL | Putative DNA-binding protein (Roi) |
Score | Peg | Function |
---|
Key Link Explains Key |
Value |
---|---|
IPR::IPR010916_interpro_download | 0.0;1-77 |
isoelectric_point | 8.26 |
molecular_weight | 26591 |
PROSITE::PS00430_interpro_download | 0.0;1-77 |
PSORT::Cytoplasmic | 8.96 |
PSORT_score::Cytoplasmic | 8.96 |
similar_to_human | no |
Compare Regions |
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