The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|155920.1.peg.847: Xylella fastidiosa Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: Phage DNA-binding antirepressor protein Roi
Translate Function Assignments


Context on contig NZ_AAAM01000038 from base 39369 to 50229 (10861 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
844 39369 43934 4566 +       2: 1 2 ff
icw(4)		 Type IV fimbrial biogenesis protein PilY1 XfasO0858, ZP_00041054.1, gi|22996810, COG: COG3419
2173 43931 44386 456 + -4     2: 1 2 ff
icw(1)
ilit(3141743)
ilit(9515697)		 Type IV pilus biogenesis protein PilE  
rna.020 44491 44567 77 + 104         tRNA-Asn-GTT tRNA-Asn-GTT
845 45631 44654 978 - 86         Phage integrase XfasO0859, ZP_00041055.1, gi|22996811, COG: COG0582
846 46308 45865 444 - 233     4: 3 4 6 5 ff
idu(6)
idu(6)
idu(6)
ilit(8063092)		 Phage ssDNA binding protein XfasO0860, ZP_00041056.1, gi|22996812, COG: COG0629
847 47079 46366 714 - 57         Phage DNA-binding antirepressor protein Roi XfasO0861, ZP_00041057.1, gi|22996813, COG: COG3646
848 48038 47076 963 - -4         Phage DNA-binding antirepressor protein Roi XfasO0862, ZP_00041058.1, gi|22996814, COG: COG3617
849 49669 48035 1635 - -4         Phage protein XfasO0863, ZP_00041059.1, gi|22996815
850 50229 49666 564 - -4         Phage recombination protein Bet XfasO0864, ZP_00041060.1, gi|22996816

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.1.peg.847 Phage DNA-binding antirepressor protein Roi
MNELIQKVSDAAITSREIAQLVESRHDNVRVTIERLSERGVIALPATQEKPTGGRPSIEY
VFTGEQGKRDSIVVVAQLSPEFTARLVDRWQELETELIQTRFVIPQTLPEALRLAADLAD
KNQALEKVVADQSPKVLTHDRIAAADGSLCLRDAAKVLQMRPIDLRHWLIVNRWIYGRPG
HSGWLAYQHRIQQGVMCHKVTTVQREEGTDKVIEQARITSKGLTTISHELTKAPLVA

MD5 = 71cd81e91c0ae0db7d43ad2d90705efd


  DNA Sequence

>fig|155920.1.peg.847 Phage DNA-binding antirepressor protein Roi
atgaacgaacttatacagaaagtaagcgatgcggcgatcacaagccgtgaaatcgcccag
ttagtggaatccaggcacgacaacgtgcgtgtaacgattgaaaggttgtccgaacgcggt
gtgattgctttacctgcaacgcaggaaaagcccacaggtggacgaccgagcatcgaatac
gttttcacgggtgaacaaggcaaacgagacagcattgtagtggtggcccagctttcaccc
gagttcacagccagactggtagatcgctggcaagaactggaaacagagctaatccaaaca
cgttttgtcattccgcaaacactgccagaagcactccgactagcggcagacttggctgac
aagaaccaggcattagaaaaggtggtggcagatcaatcccccaaggtgctgacccatgat
cggattgcagcagctgatggatcactgtgcctgcgtgacgctgccaaggtgttacagatg
cgcccgattgacctgcgtcattggttaatcgttaaccgctggatctatggcagacccgga
catagtgggtggcttgcctatcaacatcgcatccagcagggcgtgatgtgccacaaagtg
accacagtccaacgtgaagagggcaccgacaaggtgattgagcaagcccgtatcacttca
aagggcctgaccacaatcagtcatgaactcacgaaagcaccattggtcgcgtga


  DNA with Flanking Sequence

>fig|155920.1.peg.847 Phage DNA-binding antirepressor protein Roi
ctgcacatcgttaattccaggtccgcattaattgcattagatgaaactgaaaagggagta
ggttcaaccgacacccttggcggccaacaggaactagccatcgtcaacgagtccggcatg
tggacactagtcctacgctgccgtgatgccgtcaagccgggaactgtcccctaccgcgtc
cgcaaatggatcacaggcgaagtccttccctcgatccgcaagacgggcagttataccgcc
acgggaacaatggtgaatgacgatgcactctgcgccatctggtttctgtgcgaccacttc
aagaagctgcacgagatgtcccgcgtcaataaggttccgcaagcactgtattggcttgga
gcgacagagattagcggtgagcttggtacgcgtctgcttgagggcatgaggggcggcgtt
ctcaaaatagaaaaagccctcggcccacacatggaacaggccgcccaaaagggcatgggc
aatgcaagcaggcatctgtcatgaacgaacttatacagaaagtaagcgatgcggcgatca
caagccgtgaaatcgcccagttagtggaatccaggcacgacaacgtgcgtgtaacgattg
aaaggttgtccgaacgcggtgtgattgctttacctgcaacgcaggaaaagcccacaggtg
gacgaccgagcatcgaatacgttttcacgggtgaacaaggcaaacgagacagcattgtag
tggtggcccagctttcacccgagttcacagccagactggtagatcgctggcaagaactgg
aaacagagctaatccaaacacgttttgtcattccgcaaacactgccagaagcactccgac
tagcggcagacttggctgacaagaaccaggcattagaaaaggtggtggcagatcaatccc
ccaaggtgctgacccatgatcggattgcagcagctgatggatcactgtgcctgcgtgacg
ctgccaaggtgttacagatgcgcccgattgacctgcgtcattggttaatcgttaaccgct
ggatctatggcagacccggacatagtgggtggcttgcctatcaacatcgcatccagcagg
gcgtgatgtgccacaaagtgaccacagtccaacgtgaagagggcaccgacaaggtgattg
agcaagcccgtatcacttcaaagggcctgaccacaatcagtcatgaactcacgaaagcac
cattggtcgcgtgatcatgtcatccgaagcaatgaaacctcccttagcatcactaccacg
gaacactagacatggcacgcggaattaacaaggtgatcctagtcggcaacctggggaacg
agccggatatcaaatacacccaaagcggcatgacgatcaccaacattagcctagcaacca
gcagcaaacgcaaggacagagagggcaatacccaggagcggaccgaatggcaccgcgtca
agtttttcggaaagctgggcgagattgccgccgaatatctgcacaagggatcgcagtgct
acatagagggtgccattcgctacgacaagttcaccggccaggagcgttatgtcactgaga
ttattgctgaccaaatgcacatgcttggcggtcgcggtgaaggctccaaaggaagcccaa
gaaaaacggtattaccgcgtcagcgatcagataaaaacgcttacaaaacctggaaagaag
aggaggttgtcgatgacgagattccgttcttctg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
fig|155920.4.peg.4086 Xylella fastidiosa subsp. sandyi Ann-1 FIG   Phage DNA-binding antirepressor protein Roi
gb|EAO31447.1 Xylella fastidiosa Ann-1     putative DNA-binding protein (Roi)
gi|71729331 Xylella fastidiosa Ann-1 NCBI   putative DNA-binding protein (Roi)
gi|71900919 Xylella fastidiosa Ann-1 NCBI   putative DNA-binding protein (Roi)
img|638358828 Xylella fastidiosa Ann-1 IMG   putative DNA-binding protein (Roi)
ref|ZP_00683034.1 Xylella fastidiosa Ann-1 RefSeq   putative DNA-binding protein (Roi)
tr|Q3R2H2 Xylella fastidiosa Ann-1 TrEMBL   Putative DNA-binding protein (Roi)


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value
IPR::IPR010916_interpro_download 0.0;1-77
isoelectric_point 8.26
molecular_weight 26591
PROSITE::PS00430_interpro_download 0.0;1-77
PSORT::Cytoplasmic 8.96
PSORT_score::Cytoplasmic 8.96
similar_to_human no


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search