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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|155920.1.peg.845: Xylella fastidiosa Ann-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 155920

Current Assignment: Phage integrase
Translate Function Assignments


Context on contig NZ_AAAM01000038 from base 39369 to 50229 (10861 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
844 39369 43934 4566 +       2: 1 2 ff
icw(4)		 Type IV fimbrial biogenesis protein PilY1 XfasO0858, ZP_00041054.1, gi|22996810, COG: COG3419
2173 43931 44386 456 + -4     2: 1 2 ff
icw(1)
ilit(3141743)
ilit(9515697)		 Type IV pilus biogenesis protein PilE  
rna.020 44491 44567 77 + 104         tRNA-Asn-GTT tRNA-Asn-GTT
845 45631 44654 978 - 86         Phage integrase XfasO0859, ZP_00041055.1, gi|22996811, COG: COG0582
846 46308 45865 444 - 233     4: 3 4 6 5 ff
idu(6)
idu(6)
idu(6)
ilit(8063092)		 Phage ssDNA binding protein XfasO0860, ZP_00041056.1, gi|22996812, COG: COG0629
847 47079 46366 714 - 57         Phage DNA-binding antirepressor protein Roi XfasO0861, ZP_00041057.1, gi|22996813, COG: COG3646
848 48038 47076 963 - -4         Phage DNA-binding antirepressor protein Roi XfasO0862, ZP_00041058.1, gi|22996814, COG: COG3617
849 49669 48035 1635 - -4         Phage protein XfasO0863, ZP_00041059.1, gi|22996815
850 50229 49666 564 - -4         Phage recombination protein Bet XfasO0864, ZP_00041060.1, gi|22996816

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|155920.1.peg.845 Phage integrase
MGRRRKRNKHLPQSMFFQHGAYYFVASGKWLPLGKEYGAALGKYAVFVGKKPTVDSVKDM
VWGYIEAKRPKLSAKTIEGYERNAANLCAVFGHLRPDEIETSDIFRYLTTKGNVQANRDK
ALLSASYSWHRLGGYKGSDPTKRLQYRNEEKPRDRYVEDIELNSILAKASHKLSCIATFL
ELTGMRQGDALRVKLADLDDDGFIYWNSKSKKKQGLHRSDALTACIERARELWRRENQVW
LFESHPKGKHSKRGIGPYTPSGLRAMWRVARAKAGLSDVRLHDLRAKAGSDRETVEEAQQ
VLGHSDAKVTQRHYRRRMTRVNPTR

MD5 = cf3c5dba20a5fa5b70bee4f0ac601777


  DNA Sequence

>fig|155920.1.peg.845 Phage integrase
atgggcagacgacgaaagcgcaacaaacaccttcctcaatcaatgttcttccagcatgga
gcgtactactttgttgctagcggcaaatggctcccactggggaaagagtacggtgcggca
cttggcaaatacgcggtgtttgtcggaaagaaacctacagtcgatagcgtgaaagacatg
gtgtggggctacattgaggccaagcgtccgaaattgtcagccaaaaccatcgaagggtac
gagcgcaatgcagccaacttgtgcgcagtattcggacacctgcgccctgatgaaatcgaa
acatccgacatatttcgctacctgaccaccaagggcaacgtgcaagccaaccgcgacaag
gccctattgtcggcatcgtatagctggcacaggctcgggggctacaaaggatctgacccg
accaagcgtctacagtatcggaatgaggaaaagccccgtgatcgctacgtcgaggatatc
gagcttaattcgattctcgccaaggcaagccataaactatcctgtatcgctacattcctc
gaactgactggcatgcgtcagggcgatgcgcttcgcgtgaagctggccgacctggacgat
gatgggttcatctactggaacagcaaatctaaaaagaaacagggattgcatcgatcagat
gcactgacggcttgcattgagcgggcacgcgagctgtggcggcgagagaaccaagtttgg
ctattcgagagccaccccaaaggtaagcattccaaacgcgggattggaccgtacacaccg
tccggcctacgcgccatgtggcgagttgccagggccaaggcaggactgtcagatgtgcgc
ctgcatgatttacgagccaaggcggggagtgaccgggaaacggtcgaagaagcgcagcag
gtattggggcattctgatgcaaaagtgacgcaacgccactaccgtcggaggatgacgcgg
gtcaatccaaccaggtga


  DNA with Flanking Sequence

>fig|155920.1.peg.845 Phage integrase
ggaaagctgggcgagattgccgccgaatatctgcacaagggatcgcagtgctacatagag
ggtgccattcgctacgacaagttcaccggccaggagcgttatgtcactgagattattgct
gaccaaatgcacatgcttggcggtcgcggtgaaggctccaaaggaagcccaagaaaaacg
gtattaccgcgtcagcgatcagataaaaacgcttacaaaacctggaaagaagaggaggtt
gtcgatgacgagattccgttcttctgaggtggaattcgtgagcaacctgtggctgagtcc
agaagaagtgacagaactgaccgcacgcaagaaatgggcagcccaaacccgagccttgat
atcaatgggtatcccgttcaagccgaacgccgttggtcgccccttggtagaacgtgctgc
tgtgatgtccacgacgccaaccgctagtccacgtcgtaaggcaacgccgaattggaatgc
gttgcataaagtagcgtgacatgggcagacgacgaaagcgcaacaaacaccttcctcaat
caatgttcttccagcatggagcgtactactttgttgctagcggcaaatggctcccactgg
ggaaagagtacggtgcggcacttggcaaatacgcggtgtttgtcggaaagaaacctacag
tcgatagcgtgaaagacatggtgtggggctacattgaggccaagcgtccgaaattgtcag
ccaaaaccatcgaagggtacgagcgcaatgcagccaacttgtgcgcagtattcggacacc
tgcgccctgatgaaatcgaaacatccgacatatttcgctacctgaccaccaagggcaacg
tgcaagccaaccgcgacaaggccctattgtcggcatcgtatagctggcacaggctcgggg
gctacaaaggatctgacccgaccaagcgtctacagtatcggaatgaggaaaagccccgtg
atcgctacgtcgaggatatcgagcttaattcgattctcgccaaggcaagccataaactat
cctgtatcgctacattcctcgaactgactggcatgcgtcagggcgatgcgcttcgcgtga
agctggccgacctggacgatgatgggttcatctactggaacagcaaatctaaaaagaaac
agggattgcatcgatcagatgcactgacggcttgcattgagcgggcacgcgagctgtggc
ggcgagagaaccaagtttggctattcgagagccaccccaaaggtaagcattccaaacgcg
ggattggaccgtacacaccgtccggcctacgcgccatgtggcgagttgccagggccaagg
caggactgtcagatgtgcgcctgcatgatttacgagccaaggcggggagtgaccgggaaa
cggtcgaagaagcgcagcaggtattggggcattctgatgcaaaagtgacgcaacgccact
accgtcggaggatgacgcgggtcaatccaaccaggtgattattagacaatcccaccttta
ttagactgctgaccaaaacaacaagggcttatacttccataagcccttgtatttaaaaaa
attatggcgcccgaagttggactcgaaccaacgaccccctgattaacagtcaagtgctct
aaccggctgagctattcgggcaatcttgcaattgtacccagccactcatgactgaatcaa
cattattctcaacgcattttctggaacattgaaatgcttccaactaaaagcaatgcggga
acacgttaccagcattcggataattcaccttggctattcgtcttaattccagcctggttg
ataaacaaggtaccgcacttgtcgttttgctgagtgccttgtggcaccgcactgacagta
aacgcagtgcgcgtggcatctccaacaaacaccaaaagataagatgccgtcccttggcgt
ggggactgggttataggattggttgcggggaatccggcataagtattgttcaccgtac


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
GO:0006310       P:DNA recombination
GO:0015074       P:DNA integration
fig|155920.4.peg.4083 Xylella fastidiosa subsp. sandyi Ann-1 FIG   Phage integrase
gb|EAO31445.1 Xylella fastidiosa Ann-1     Phage integrase
gi|71729329 Xylella fastidiosa Ann-1 NCBI   Phage integrase
gi|71900917 Xylella fastidiosa Ann-1 NCBI   Phage integrase
img|638358826 Xylella fastidiosa Ann-1 IMG   Phage integrase
ref|ZP_00683032.1 Xylella fastidiosa Ann-1 RefSeq   Phage integrase
tr|Q3R2H4 Xylella fastidiosa Ann-1 TrEMBL   Phage integrase


  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value
CDD::29501 965.500;154-318
IPR::IPR002104_interpro_download 22.0;162-316
IPR::IPR010998_interpro_download 16.0;57-158
IPR::IPR011010_interpro_download 81.4;154-316
IPR::IPR013762_interpro_download 78.2;154-317
isoelectric_point 10.63
molecular_weight 37280
PFAM::PF00589 0.0;162-320
PFAM::PF00589_interpro_download 22.0;162-316
PFAM::PF00589_interpro_download 78.2;154-317
PSORT::unknown unknown
similar_to_human no
SSF::SSF47823_interpro_download 16.0;57-158
SSF::SSF56349_interpro_download 81.4;154-316


  Protein Families

No protein families found

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