The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
838 | 33206 | 34684 | 1479 | + | ![]() |
ff | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | XfasO0852, ZP_00041048.1, gi|22996804, COG: COG4943 | ||||
839 | 35087 | 36481 | 1395 | + | 402 | ![]() |
1: 7 | ff | Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase PpnN (EC 3.2.2.4) (EC 3.2.2.10) | XfasO0853, ZP_00041049.1, gi|22996805, COG: COG1611 | ||
840 | 36744 | 37139 | 396 | + | 262 | ![]() |
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5 | 2: 1 2 | ff icw(3) |
Type IV fimbrial biogenesis protein FimT | XfasO0854, ZP_00041050.1, gi|22996806, COG: COG4970 |
841 | 37130 | 37618 | 489 | + | -10 | ![]() |
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4 | 2: 1 2 | ff icw(3) |
Type IV fimbrial biogenesis protein PilV | XfasO0855, ZP_00041051.1, gi|22996807, COG: COG4967 |
842 | 37615 | 38871 | 1257 | + | -4 | ![]() |
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7 | 2: 1 2 | ff icw(3) |
Type IV fimbrial biogenesis protein PilW | XfasO0856, ZP_00041052.1, gi|22996808, COG: COG4966 |
843 | 38871 | 39365 | 495 | + | -1 | ![]() |
2: 1 2 | ff idu(2) |
Type IV fimbrial biogenesis protein PilX | XfasO0857, ZP_00041053.1, gi|22996809 | ||
844 | 39369 | 43934 | 4566 | + | 3 | ![]() |
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2: 1 2 | ff icw(4) |
Type IV fimbrial biogenesis protein PilY1 | XfasO0858, ZP_00041054.1, gi|22996810, COG: COG3419 | |
2173 | 43931 | 44386 | 456 | + | -4 | ![]() |
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6 | 2: 1 2 | ff icw(1) ilit(3141743) ilit(9515697) |
Type IV pilus biogenesis protein PilE | |
rna.020 | 44491 | 44567 | 77 | + | 104 | ![]() |
tRNA-Asn-GTT | tRNA-Asn-GTT | ||||
845 | 45631 | 44654 | 978 | - | 86 | ![]() |
Phage integrase | XfasO0859, ZP_00041055.1, gi|22996811, COG: COG0582 | ||||
846 | 46308 | 45865 | 444 | - | 233 | ![]() |
4: 3 4 6 5 | ff idu(6) idu(6) idu(6) ilit(8063092) |
Phage ssDNA binding protein | XfasO0860, ZP_00041056.1, gi|22996812, COG: COG0629 | ||
847 | 47079 | 46366 | 714 | - | 57 | ![]() |
Phage DNA-binding antirepressor protein Roi | XfasO0861, ZP_00041057.1, gi|22996813, COG: COG3646 | ||||
848 | 48038 | 47076 | 963 | - | -4 | ![]() |
Phage DNA-binding antirepressor protein Roi | XfasO0862, ZP_00041058.1, gi|22996814, COG: COG3617 | ||||
849 | 49669 | 48035 | 1635 | - | -4 | ![]() |
Phage protein | XfasO0863, ZP_00041059.1, gi|22996815 |
Annotation History / View All Related Annotations | Help on Annotations |
Subsystem | Curator | Role |
---|---|---|
Type_IV_pilus | VeronikaV | Type IV fimbrial biogenesis protein PilY1 |
Bacterial_motility:Gliding | OlgaV | Type IV fimbrial biogenesis protein PilY1 |
Score | Peg | Function |
---|---|---|
6 | fig|155920.1.peg.2173 | Type IV pilus biogenesis protein PilE |
5 | fig|155920.1.peg.840 | Type IV fimbrial biogenesis protein FimT |
4 | fig|155920.1.peg.841 | Type IV fimbrial biogenesis protein PilV |
7 | fig|155920.1.peg.842 | Type IV fimbrial biogenesis protein PilW |
Key Link Explains Key |
Value |
---|---|
CDD::45464 | 977.300;1038-1321 |
evidence_code | ff |
evidence_code | icw(4);Type_IV_pilus |
IPR::IPR008707_interpro_download | 28.1;1083-1253 |
isoelectric_point | 6.45 |
molecular_weight | 163965 |
PFAM::PF05567_interpro_download | 28.1;1083-1253 |
Phobius::signal | 1-24 |
PSORT::Extracellular | 9.64 |
PSORT_score::Extracellular | 9.64 |
similar_to_human | no |
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