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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


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Protein fig|1155766.14.peg.2504: Enterococcus faecium Aus0004

This feature in The SEED Viewer

NCBI Taxonomy Id: 1155766

Current Assignment: Phage integrase
Translate Function Assignments



Context on contig NC_017022 from base 2428604 to 2439956 (11353 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2491 2428729 2428604 126 -           FIG00631505: hypothetical protein locus|EFAU004_02403, protein_id|YP_005355604.1, gi|383329720, geneID|11955789
2492 2428871 2428698 174 - -32         hypothetical protein locus|EFAU004_02404, protein_id|YP_005355605.1, gi|383329721, geneID|11955790
2493 2429056 2428868 189 - -4         FIG00629649: hypothetical protein locus|EFAU004_02405, protein_id|YP_005355606.1, gi|383329722, geneID|11955791
2494 2429361 2429077 285 - 20         FIG00630724: hypothetical protein locus|EFAU004_02406, protein_id|YP_005355607.1, gi|383329723, geneID|11955792
2495 2429708 2429409 300 - 47         FIG00629011: hypothetical protein locus|EFAU004_02407, protein_id|YP_005355608.1, gi|383329724, geneID|11955793
2496 2430016 2429813 204 - 104         Helix-turn-helix domain protein locus|EFAU004_02408, protein_id|YP_005355609.1, gi|383329725, geneID|11955794
2497 2430777 2430031 747 - 14         Phage antirepressor protein locus|EFAU004_02409, protein_id|YP_005355610.1, gi|383329726, geneID|11955795
2498 2430855 2431163 309 + 77         hypothetical protein locus|EFAU004_02410, protein_id|YP_005355611.1, gi|383329727, geneID|11955796
2499 2431391 2431134 258 - -30         hypothetical protein locus|EFAU004_02411, protein_id|YP_005355612.1, gi|383329728, geneID|11955797
2500 2431829 2431689 141 - 297         hypothetical protein locus|EFAU004_02412, protein_id|YP_005355613.1, gi|383329729, geneID|11955798
2501 2432123 2432443 321 + 293 4     Helix-turn-helix motif locus|EFAU004_02413, protein_id|YP_005355614.1, gi|383329730, geneID|11955799
2502 2432461 2432892 432 + 17         Protein of unknown function DUF955 locus|EFAU004_02414, protein_id|YP_005355615.1, gi|383329731, geneID|11955800
2503 2433019 2433603 585 + 126         hypothetical protein locus|EFAU004_02415, protein_id|YP_005355616.1, gi|383329732, geneID|11955801
2504 2433714 2434853 1140 + 110       Phage integrase gene_name|xerC, locus|EFAU004_02416, protein_id|YP_005355617.1, gi|383329733, geneID|11955802
2505 2436567 2434942 1626 - 88     1: 1   Heat shock protein 60 family chaperone GroEL gene_name|groL, locus|EFAU004_02417, protein_id|YP_005355618.1, gi|383329734, geneID|11955803
2506 2436902 2436618 285 - 50     1: 1   Heat shock protein 60 family co-chaperone GroES gene_name|groS, locus|EFAU004_02418, protein_id|YP_005355619.1, gi|383329735, geneID|11955804
2507 2437127 2437789 663 + 224         YdiL locus|EFAU004_02419, protein_id|YP_005355620.1, gi|383329736, geneID|11955805
2508 2439157 2437865 1293 - 75         PTS system, cellobiose-specific IIC component (EC 2.7.1.69) locus|EFAU004_02420, protein_id|YP_005355621.1, gi|383329737, geneID|11955806
2509 2439327 2439956 630 + 169         Rrf2-linked NADH-flavin reductase locus|EFAU004_02421, protein_id|YP_005355622.1, gi|383329738, geneID|11955807

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1155766.14.peg.2504 Phage integrase
MWVEQTKDGQFKFIERYVDPYTEKTRKKSTTLTSNSPQAWKKAQKILDKKIKEALENYNK
SDITFGELYKEWYEYYKQHVKRTSYLKVPMMMKHVSKHISDDTIVRNIDETLINKMIEDM
YTFGDLSLNYTKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRKLSMDKKYL
EKEEIDQILKQLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGTLDYT
SVKMDNAIKTTPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTSGTPL
TLHSFNAILHKVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANTTLSI
YNHVTKRAKQQVIDKLNSL

MD5 = 7fd1502831e5c8bc91be9115a9ef58aa


  DNA Sequence

>fig|1155766.14.peg.2504 Phage integrase
gtgtgggttgaacaaaccaaagatggccaattcaagtttattgaaagatatgtagatcct
tatacagaaaaaacacgaaaaaaatctacaacacttacaagtaattcaccacaagcgtgg
aaaaaagctcagaaaattctagataaaaaaattaaagaagcactcgaaaattacaataaa
tcagatatcacttttggtgagctgtataaagaatggtatgaatattataagcagcatgtt
aaacgtactagctatttgaaggttccaatgatgatgaaacatgtttctaagcacataagc
gatgatacaatcgttagaaacattgatgagacactcattaataagatgattgaagatatg
tacacttttggtgatctctcactgaactacacaaagcaaacaaaaacaactctatccgtt
atgctaaactatgcaattgatagaaaatacattcaaagaaaccctgctctagcagttaaa
atccatcctaaaaaagtggaagaagaaaaaagaaagctttctatggataaaaaatatctg
gagaaagaagaaattgatcaaatactgaaacagttatattccaatcctcgcagaaaacta
cacggcataatagctgaatttctatatttgactggtttgagatatggggaattgctagct
ttgcaaatgaaggactatgaggatgggaaaatttccattaatgggaccttagattacaca
tctgtgaaaatggataatgctataaaaacaactccaaaaaatacttattcgcaacgtgaa
gtgcaattacccaatcgtgcaaaagaattgattgaaagtgtgatagctgacaatattctt
gcaggtagacccacagatcccgatcaatatatatttatatctacaagtggcactccgctt
acgctgcactcatttaacgctatactccataaagtagaggaagagttggaattagaaaaa
agtctatcctcacatatattcagacatagccacgtttcactattatctgaattaggcgta
cctcttaaagccattatggagcgtgtagggcattctgatgcaaacacaactctgtctatt
tataaccatgtaacaaaaagagccaaacaacaagtaattgataaactaaatagcctttga


  DNA with Flanking Sequence

>fig|1155766.14.peg.2504 Phage integrase
tcttctaaagaagaaaaaagcgataccttctataagattggtgacactgtaaaagttggt
gatgctgaatatacactaaatagtgtagaactaactgatgaaagaaatcaatttgaagaa
aaccaacctgcacaagtagtaaaaattacttataccgtaaaaaatgatggcgattcagat
atccctgtaggtacagatgtggaagtatatggaccagatgacaaaaaatcagagacatat
gccaacgaaaatacaatgggatctgttgctccaggaaaacaaatggatgtaactgctcat
ttcacgttaaaccaaaagggagaaatagaaatccacttctctcctttagtatcatttgaa
aaagcagctatttttaaagcaactgtataataaataaaaaacacgccccaccgtccagag
taagagcgtgcttttagaaaacaaacctatataggtctatttgttatgcctattatagca
aatgataggagatgttaaaagtgtgggttgaacaaaccaaagatggccaattcaagttta
ttgaaagatatgtagatccttatacagaaaaaacacgaaaaaaatctacaacacttacaa
gtaattcaccacaagcgtggaaaaaagctcagaaaattctagataaaaaaattaaagaag
cactcgaaaattacaataaatcagatatcacttttggtgagctgtataaagaatggtatg
aatattataagcagcatgttaaacgtactagctatttgaaggttccaatgatgatgaaac
atgtttctaagcacataagcgatgatacaatcgttagaaacattgatgagacactcatta
ataagatgattgaagatatgtacacttttggtgatctctcactgaactacacaaagcaaa
caaaaacaactctatccgttatgctaaactatgcaattgatagaaaatacattcaaagaa
accctgctctagcagttaaaatccatcctaaaaaagtggaagaagaaaaaagaaagcttt
ctatggataaaaaatatctggagaaagaagaaattgatcaaatactgaaacagttatatt
ccaatcctcgcagaaaactacacggcataatagctgaatttctatatttgactggtttga
gatatggggaattgctagctttgcaaatgaaggactatgaggatgggaaaatttccatta
atgggaccttagattacacatctgtgaaaatggataatgctataaaaacaactccaaaaa
atacttattcgcaacgtgaagtgcaattacccaatcgtgcaaaagaattgattgaaagtg
tgatagctgacaatattcttgcaggtagacccacagatcccgatcaatatatatttatat
ctacaagtggcactccgcttacgctgcactcatttaacgctatactccataaagtagagg
aagagttggaattagaaaaaagtctatcctcacatatattcagacatagccacgtttcac
tattatctgaattaggcgtacctcttaaagccattatggagcgtgtagggcattctgatg
caaacacaactctgtctatttataaccatgtaacaaaaagagccaaacaacaagtaattg
ataaactaaatagcctttgatatttttgccccttctttgccccttttgcttaaaataaaa
caaaaaaagaagaaagaaccctgttaaaatagggttctttcttaattactacatcatacc
gcccatcattgatggatccattgcaggagctgctggcgctgctggttctggtttatctgc
aacgactgcttctgtcgttaataacaaggcagaaacggaagcggcattttgcaaggcaga
acgtgttactttagttgggtctacgatacctgcttcaaccatgtttacccattctccagt
agcagcattgaaaccagtgcctagttccacgttcttcaatttatcaacaatcactgatcc
ttcataaccagcgttttcagcgatttgacgaattggttcttctaaagcacgaacaacgat
cttgatacctgttgccacgtctccttctgcttctacagcagaaactttgctgataacgtt
cactagagctgtaccaccacctgagaccattccttcttct


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
4 fig|1155766.14.peg.2501 Helix-turn-helix motif


  Attributes

Help on Attributes

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  Protein Families

No protein families found

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