Protein Page for fig|1155766.14.peg.2501

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|1155766.14.peg.2501: Enterococcus faecium Aus0004

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NCBI Taxonomy Id: 1155766

Current Assignment: Helix-turn-helix motif

Translate Function Assignments

Context on contig NC_017022 from base 2426802 to 2437789 (10988 bp)


Fid	Start	End	Size (nt)		Gap	Fc-sc	SS	Function	Aliases
2487	2427488	2426802	687	-				Phage protein	locus\|EFAU004_02400, protein_id\|YP_005355601.1, gi\|383329717, geneID\|11955786
2488	2427970	2427494	477	-	5	5		Phage protein	locus\|EFAU004_02401, protein_id\|YP_005355602.1, gi\|383329718, geneID\|11955787
2489	2428300	2428434	135	+	329			hypothetical protein
2490	2428607	2428431	177	-	-4			hypothetical protein	locus\|EFAU004_02402, protein_id\|YP_005355603.1, gi\|383329719, geneID\|11955788
2491	2428729	2428604	126	-	-4			FIG00631505: hypothetical protein	locus\|EFAU004_02403, protein_id\|YP_005355604.1, gi\|383329720, geneID\|11955789
2492	2428871	2428698	174	-	-32			hypothetical protein	locus\|EFAU004_02404, protein_id\|YP_005355605.1, gi\|383329721, geneID\|11955790
2493	2429056	2428868	189	-	-4			FIG00629649: hypothetical protein	locus\|EFAU004_02405, protein_id\|YP_005355606.1, gi\|383329722, geneID\|11955791
2494	2429361	2429077	285	-	20			FIG00630724: hypothetical protein	locus\|EFAU004_02406, protein_id\|YP_005355607.1, gi\|383329723, geneID\|11955792
2495	2429708	2429409	300	-	47			FIG00629011: hypothetical protein	locus\|EFAU004_02407, protein_id\|YP_005355608.1, gi\|383329724, geneID\|11955793
2496	2430016	2429813	204	-	104			Helix-turn-helix domain protein	locus\|EFAU004_02408, protein_id\|YP_005355609.1, gi\|383329725, geneID\|11955794
2497	2430777	2430031	747	-	14	4		Phage antirepressor protein	locus\|EFAU004_02409, protein_id\|YP_005355610.1, gi\|383329726, geneID\|11955795
2498	2430855	2431163	309	+	77			hypothetical protein	locus\|EFAU004_02410, protein_id\|YP_005355611.1, gi\|383329727, geneID\|11955796
2499	2431391	2431134	258	-	-30			hypothetical protein	locus\|EFAU004_02411, protein_id\|YP_005355612.1, gi\|383329728, geneID\|11955797
2500	2431829	2431689	141	-	297			hypothetical protein	locus\|EFAU004_02412, protein_id\|YP_005355613.1, gi\|383329729, geneID\|11955798
2501	2432123	2432443	321	+	293			Helix-turn-helix motif	locus\|EFAU004_02413, protein_id\|YP_005355614.1, gi\|383329730, geneID\|11955799
2502	2432461	2432892	432	+	17			Protein of unknown function DUF955	locus\|EFAU004_02414, protein_id\|YP_005355615.1, gi\|383329731, geneID\|11955800
2503	2433019	2433603	585	+	126			hypothetical protein	locus\|EFAU004_02415, protein_id\|YP_005355616.1, gi\|383329732, geneID\|11955801
2504	2433714	2434853	1140	+	110			Phage integrase	gene_name\|xerC, locus\|EFAU004_02416, protein_id\|YP_005355617.1, gi\|383329733, geneID\|11955802
2505	2436567	2434942	1626	-	88		1: 1	Heat shock protein 60 family chaperone GroEL	gene_name\|groL, locus\|EFAU004_02417, protein_id\|YP_005355618.1, gi\|383329734, geneID\|11955803
2506	2436902	2436618	285	-	50		1: 1	Heat shock protein 60 family co-chaperone GroES	gene_name\|groS, locus\|EFAU004_02418, protein_id\|YP_005355619.1, gi\|383329735, geneID\|11955804
2507	2437127	2437789	663	+	224			YdiL	locus\|EFAU004_02419, protein_id\|YP_005355620.1, gi\|383329736, geneID\|11955805

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|1155766.14.peg.2501 Helix-turn-helix motif
MITFERIKELAKKQGKSLNKVEEDLGYGKNVLYRLKNSNPSTERLQEIADYFDVSVDYLL
GREEKETPKHVDLSENDTVFSFDGKEISKETMRKAIAIAKALEENE

MD5 = 43e9316eb55c644cde6e57423517ad61

DNA Sequence

>fig|1155766.14.peg.2501 Helix-turn-helix motif
atgataacgtttgagagaataaaagagttagcgaaaaaacagggaaaatcattaaataaa
gttgaagaagacctaggctatggtaaaaacgtcttatatagacttaagaactcaaacccc
tctacagaacgtttgcaagaaattgctgactatttcgatgtctctgtagactatcttctg
gggcgcgaagaaaaagaaacccctaaacatgtggatttatcagaaaacgatactgttttt
tcttttgatggaaaagaaatatctaaggagacaatgcgtaaagcgattgcaattgctaaa
gctttagaggaaaatgaatag

DNA with Flanking Sequence

>fig|1155766.14.peg.2501 Helix-turn-helix motif
agcttatttagatattcattatgctgttatctatggtcagcttccagaagaccgtaaaaa
cgatgactaaacgtgagctaaaatctctgctatggctgcaaccatggcagagtcttcttt
atctaccgcgtgttccatcgccacttttgcttgtttcagtatgtctaatttcaaatcttc
gatttttgccgagactgttttttccatattcttctctcctttcttttatattcgtaaaca
aatttaacaactttttaaaaaactgcgttgactaaattaacatacagtgttaaaatcaga
acatagttaaataagacatataaacattgattttaaaagctttcttggcggttggcattt
attaatcaatagtgttttttgttgtctttttagttgttaaacttgtttacaagaatgata
ttaacaccttttgttaaaatagtcaacgaattttaacaaataaagttaaatattttttct
tgaacgaaaggaatattgatatgataacgtttgagagaataaaagagttagcgaaaaaac
agggaaaatcattaaataaagttgaagaagacctaggctatggtaaaaacgtcttatata
gacttaagaactcaaacccctctacagaacgtttgcaagaaattgctgactatttcgatg
tctctgtagactatcttctggggcgcgaagaaaaagaaacccctaaacatgtggatttat
cagaaaacgatactgttttttcttttgatggaaaagaaatatctaaggagacaatgcgta
aagcgattgcaattgctaaagctttagaggaaaatgaatagttggagtgatgggttgtat
gtatttgaaattgaaagaaatgttgagcgaatacaatttgaaagtagtttacatggaaat
gaaagagcctggcttctattatccgaagcctagaatcatttttttgaatgaaaatctata
tggcgaaactgcagaagcctttcatttatctcatgaacttgcacatttcagcgcctctca
ttttgaattttcagttttgtacgatacttctacaacttttcactcaaaatttgaaacaga
agcagataaaatagctattctaattttattaaatatctatattgagaacgaactgactga
tgaatctcagtttaacctcgaaaaatttatggaatattattctattcagaataagctcag
atacacttgttatgctgtctgccaatgctattttaagaaaaaatattcttacgcaaggca
atatgtatgaatacatcaagaattattaaaaaaaccgatttcagcaaaacattaaaaaag
c

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  Functional Coupling


Score	Peg	Function
5	fig\|1155766.14.peg.2488	Phage protein
4	fig\|1155766.14.peg.2497	Phage antirepressor protein

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