The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|1155766.14.peg.2467: Enterococcus faecium Aus0004

This feature in The SEED Viewer

NCBI Taxonomy Id: 1155766

Current Assignment: FIG00627895: hypothetical protein
Translate Function Assignments



Context on contig NC_017022 from base 2408732 to 2419955 (11224 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2459 2408732 2409088 357 +           hypothetical protein  
2460 2411725 2409209 2517 - 120         Phage tail length tape-measure protein locus|EFAU004_02370, protein_id|YP_005355571.1, gi|383329687, geneID|11955756
2461 2411925 2411743 183 - 17         FIG00630712: hypothetical protein  
2462 2412161 2411928 234 - 2         FIG00631641: hypothetical protein locus|EFAU004_02371, protein_id|YP_005355572.1, gi|383329688, geneID|11955757
2463 2412918 2412337 582 - 175         FIG00632609: hypothetical protein locus|EFAU004_02372, protein_id|YP_005355573.1, gi|383329689, geneID|11955758
2464 2413334 2412930 405 - 11         FIG00627453: hypothetical protein locus|EFAU004_02373, protein_id|YP_005355574.1, gi|383329690, geneID|11955759
2465 2413728 2413327 402 - -8         FIG00632320: hypothetical protein locus|EFAU004_02374, protein_id|YP_005355575.1, gi|383329691, geneID|11955760
2466 2414071 2413718 354 - -11         FIG00629412: hypothetical protein locus|EFAU004_02375, protein_id|YP_005355576.1, gi|383329692, geneID|11955761
2467 2414372 2414061 312 - -11         FIG00627895: hypothetical protein locus|EFAU004_02376, protein_id|YP_005355577.1, gi|383329693, geneID|11955762
2468 2415244 2414369 876 - -4         Phage protein locus|EFAU004_02377, protein_id|YP_005355578.1, gi|383329694, geneID|11955763
2469 2416414 2415254 1161 - 9         major capsid protein b locus|EFAU004_02378, protein_id|YP_005355579.1, gi|383329695, geneID|11955764
2470 2417100 2416414 687 - -1         Prophage Clp protease-like protein locus|EFAU004_02379, protein_id|YP_005355580.1, gi|383329696, geneID|11955765
2471 2418241 2417063 1179 - -38         Portal protein, phage associated locus|EFAU004_02380, protein_id|YP_005355581.1, gi|383329697, geneID|11955766
2472 2419955 2418261 1695 - 19         Phage terminase large subunit locus|EFAU004_02381, protein_id|YP_005355582.1, gi|383329698, geneID|11955767

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1155766.14.peg.2467 FIG00627895: hypothetical protein
MTPEQVTEELLIAVKDNIYVTWNEEDESIKKMIAKNAVYLQSKVSTTLSFSPESLEYGLL
IERCRYDWNRALDEFEQNFASELLGFIQHYALQEYIAGDVNGE

MD5 = 6c680c5b2da8d7bf78631ebb270e9074


  DNA Sequence

>fig|1155766.14.peg.2467 FIG00627895: hypothetical protein
atgacgcctgaacaagtgactgaagaattgctaatagctgtgaaggataatatttacgtt
acctggaacgaagaagatgagtcaattaaaaagatgatagctaaaaatgctgtttatctt
caaagtaaagtgagtacaacactttctttttctcctgaaagcttagaatacggattgcta
atcgaaagatgtagatacgactggaatcgtgctttagatgagtttgaacaaaatttcgct
agtgagttattaggtttcattcaacattatgcgctacaagaatatattgcaggtgatgtg
aatggcgaataa


  DNA with Flanking Sequence

>fig|1155766.14.peg.2467 FIG00627895: hypothetical protein
ctaagtcttgattatattagaagctgtgaaaacggagaaaatattctaaaagatatggca
aacattgtaaatgttacagtagaatctttggaaactataaacactaattcaggaggcgca
cagtgggttattaaccgtcctaaagcgaattattggaaaaaggtttatctggattctaat
cggctatatcgctaccttagagggcaaaaaacaaatatacaaatctggacagccgagatg
tgggcacagctttggaacatgatgtatttcaatattggtcctaaagttcacgaggaatta
gacttttgttttgctactgatccaatagaaaaagttaaagaagtaaaaatcttacacaat
gctggagtaacaacaaacgatgaagatttatttttcaaagggagatacgtgacttctacg
ccttttgatgaagatttatcatttgtaaacaagaaaaaatgctcttacgcatatgttaaa
gcaattaaggcggtggttagatgacgcctgaacaagtgactgaagaattgctaatagctg
tgaaggataatatttacgttacctggaacgaagaagatgagtcaattaaaaagatgatag
ctaaaaatgctgtttatcttcaaagtaaagtgagtacaacactttctttttctcctgaaa
gcttagaatacggattgctaatcgaaagatgtagatacgactggaatcgtgctttagatg
agtttgaacaaaatttcgctagtgagttattaggtttcattcaacattatgcgctacaag
aatatattgcaggtgatgtgaatggcgaataatcgtagactcgaagaaacattcaacgat
ggttggttaaagattttgacgcaaactaccaaaagaaatgaactaggaaaaaagattggt
gtagaagatacagaaatcacttctttaaaatttagaaatctttccatgagagatagtgat
ataacagctatggatgcgatgggatcgaaattaactaagaaagtaaagactccatttcat
ccaatcgccaagaaatttaataaagatcaatattttatcgtaatcgatagtatgcgttac
aacgttatctatgccgattacgataatttttatatctatttttatcttgaaagtgtgggt
gaatatggtgattgataattctaaagaaaaagaacgtttaaataagcaaatttctgctat
caaaacttccttagaagagcattttggcctcaaactctttcaagactccgtaggcgagga
tgagctacctgatgattttaattacttcattctcgaaacaggagaaatagaa


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search