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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|1125636.3.peg.4310: Escherichia coli 2854350

This feature in The SEED Viewer

NCBI Taxonomy Id: 1125636

Current Assignment: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Translate Function Assignments



Context on contig APZL01000139 from base 3947 to 16088 (12142 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
4306 3947 5593 1647 +       1: 1   Acetolactate synthase large subunit (EC 2.2.1.6) locus|EC2854350_4135, protein_id|END37817.1, gi|477055053
4307 5590 5853 264 + -4     1: 1 dlit(3550695) Acetolactate synthase small subunit (EC 2.2.1.6) gene_name|ilvM, locus|EC2854350_4136, protein_id|END37818.1, gi|477055054
4308 5873 6802 930 + 19     2: 3 1 dlit(9163511)
dlit(3550695)
dlit(3897211)
dlit(3069843)
Branched-chain amino acid aminotransferase (EC 2.6.1.42) gene_name|ilvE, locus|EC2854350_4137, protein_id|END37819.1, gi|477055055
4309 6867 8717 1851 + 64     1: 1   Dihydroxy-acid dehydratase (EC 4.2.1.9) gene_name|ilvD, locus|EC2854350_4138, protein_id|END37820.1, gi|477055056
4310 8720 10264 1545 + 2     1: 1   Threonine dehydratase biosynthetic (EC 4.3.1.19) locus|EC2854350_4139, protein_id|END37821.1, gi|477055057
4311 11209 10316 894 - 51         Transcriptional regulator IlvY, LysR family locus|EC2854350_4140, protein_id|END37822.1, gi|477055058
4312 11359 11850 492 + 149     2: 1 2   Ketol-acid reductoisomerase (EC 1.1.1.86) locus|EC2854350_4141, protein_id|END37823.1, gi|477055059
4313 11920 12834 915 + 69     2: 1 2   Ketol-acid reductoisomerase (EC 1.1.1.86) gene_name|ilvC, locus|EC2854350_4142, protein_id|END37824.1, gi|477055060
4314 13202 12921 282 - 86       dlit(8163020) Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) gene_name|ppiC, locus|EC2854350_4143, protein_id|END37825.1, gi|477055061
4315 13850 13401 450 - 198         FIG00642180: hypothetical protein locus|EC2854350_4144, protein_id|END37826.1, gi|477055062
4316 14067 16088 2022 + 216         ATP-dependent DNA helicase Rep gene_name|rep, locus|EC2854350_4145, protein_id|END37827.1, gi|477055063

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Leucine,_Isoleucine,_and_Valine_biosynthesis_PanGenomes Acharya_Geeta_user Threonine dehydratase biosynthetic (EC 4.3.1.19)


  Protein Sequence

>fig|1125636.3.peg.4310 Threonine dehydratase biosynthetic (EC 4.3.1.19)
MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHS
FKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA
VRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHL
DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAE
GVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI
AQHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLG
GRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVR
YMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTHWNISLFHYRSHGTDYGRVLAAFE
LGDHEPDFETRLNELGYDCHDETNNPAFRFFLAG

MD5 = 66c2f890ecbb00eeea3c7c7105da1ffa


  DNA Sequence

>fig|1125636.3.peg.4310 Threonine dehydratase biosynthetic (EC 4.3.1.19)
atggctgactcgcaacccctgtccggtgctccggaaggtgccgaatatttaagagcagtg
ctgcgcgcgccggtttacgaggcggcgcaggttacgccgctacaaaaaatggaaaaactg
tcgtcgcgtcttgataacgtcattctggtgaagcgcgaagatcgccagccagtgcacagc
tttaagctgcgcggcgcatacgccatgatggcgggcctgacggaagaacaaaaagcgcac
ggcgtgatcactgcttctgcgggtaaccacgcgcagggcgtcgcgttttcttctgcgcgg
ttaggcgtgaaggccctgatcgttatgccaaccgccaccgccgacatcaaagtcgatgcg
gtacgtggattcggcggcgaagtgctgcttcatggcgcgaactttgacgaagcgaaagct
aaagcgatcgaactgtcacagcagcaggggttcacctgggtgccgccgttcgaccatccg
atggtgattgccgggcaaggcacgctggcgctggaactgctccagcaggacgcccatctc
gaccgcgtatttgtgccagtcggcggcggcggtctggcggcgggcgttgcggtgctgatc
aaacaactgatgccacaaatcaaagtgatcgccgtagaagcggaagactccgcctgcctg
aaagcagcgctggatgcgggtcatccggttgatctgccgcgcgtagggctatttgctgaa
ggcgtagcggtaaaacgcatcggtgacgaaaccttccgtttatgccaggagtatctcgac
gacatcatcaccgtcgatagtgatgcgatctgtgcggcgatgaaggatttattcgaagat
gtgcgcgcggtggcggaaccctctggcgcgcttgcgctggcgggaatgaaaaaatatatc
gcccagcacaacattcgcggcgaacggctggcgcatattctttccggtgccaacgtgaac
ttccacggcctgcgctacgtctcggaacgctgcgaactgggcgaacagcgtgaagcgttg
ttggcggtgaccattccggaagaaaaaggcagcttcctcaaattctgccaactgcttggc
gggcgatcggtcaccgagttcaactaccgttttgccgatgccaaaaacgcctgcatcttt
gtcggcgtgcgcctgagccgcggcctcgaagagcgcaaagaaattttgcagatgctcaac
gacggcggctacagcgtggtggatctctccgacgacgaaatggcgaagttgcatgtgcgc
tatatggtcggcgggcgtccgtcacatccgttgcaggaacgcctctacagcttcgaattc
ccggaatcaccgggcgcgctgctgcgcttcctcaacacgctgggtacgcactggaacatt
tctttgttccactatcgcagccatggcaccgactacgggcgcgtactggcggcgttcgaa
ctcggcgaccatgaaccggatttcgaaacccggctaaatgagctgggctacgattgccac
gacgaaaccaataatccggcgttcaggttctttttggcgggttag


  DNA with Flanking Sequence

>fig|1125636.3.peg.4310 Threonine dehydratase biosynthetic (EC 4.3.1.19)
gcgaaagtgtacgaaagccaggacgacgcggtagaagcgatcctcggtggcaaagttgtc
gcgggcgatgtggtggtgatccgctatgaaggcccgaaaggcggccctggcatgcaggaa
atgctctacccaaccagcttcctgaaatcaatgggtctcggtaaagcctgtgcgctgatc
accgacggtcgtttctctggcggcacctctggtctttccatcggccacgtctcaccggaa
gcggcaagcggcggcagcattggtctgattgaagatggtgacctgatcgctatcgacatc
ccgaaccgtggcattcagttacaggtaagcgatgccgaactggcggcgcgtcgtgaagcg
caggaagctcggggtgacaaagcctggacgccgaaaaaccgtgaacgtcaggtttccttt
gccctgcgcgcctacgccagcctggcaaccagcgccgacaaaggtgcggtgcgcgataaa
tcgaaactggggggttaataatggctgactcgcaacccctgtccggtgctccggaaggtg
ccgaatatttaagagcagtgctgcgcgcgccggtttacgaggcggcgcaggttacgccgc
tacaaaaaatggaaaaactgtcgtcgcgtcttgataacgtcattctggtgaagcgcgaag
atcgccagccagtgcacagctttaagctgcgcggcgcatacgccatgatggcgggcctga
cggaagaacaaaaagcgcacggcgtgatcactgcttctgcgggtaaccacgcgcagggcg
tcgcgttttcttctgcgcggttaggcgtgaaggccctgatcgttatgccaaccgccaccg
ccgacatcaaagtcgatgcggtacgtggattcggcggcgaagtgctgcttcatggcgcga
actttgacgaagcgaaagctaaagcgatcgaactgtcacagcagcaggggttcacctggg
tgccgccgttcgaccatccgatggtgattgccgggcaaggcacgctggcgctggaactgc
tccagcaggacgcccatctcgaccgcgtatttgtgccagtcggcggcggcggtctggcgg
cgggcgttgcggtgctgatcaaacaactgatgccacaaatcaaagtgatcgccgtagaag
cggaagactccgcctgcctgaaagcagcgctggatgcgggtcatccggttgatctgccgc
gcgtagggctatttgctgaaggcgtagcggtaaaacgcatcggtgacgaaaccttccgtt
tatgccaggagtatctcgacgacatcatcaccgtcgatagtgatgcgatctgtgcggcga
tgaaggatttattcgaagatgtgcgcgcggtggcggaaccctctggcgcgcttgcgctgg
cgggaatgaaaaaatatatcgcccagcacaacattcgcggcgaacggctggcgcatattc
tttccggtgccaacgtgaacttccacggcctgcgctacgtctcggaacgctgcgaactgg
gcgaacagcgtgaagcgttgttggcggtgaccattccggaagaaaaaggcagcttcctca
aattctgccaactgcttggcgggcgatcggtcaccgagttcaactaccgttttgccgatg
ccaaaaacgcctgcatctttgtcggcgtgcgcctgagccgcggcctcgaagagcgcaaag
aaattttgcagatgctcaacgacggcggctacagcgtggtggatctctccgacgacgaaa
tggcgaagttgcatgtgcgctatatggtcggcgggcgtccgtcacatccgttgcaggaac
gcctctacagcttcgaattcccggaatcaccgggcgcgctgctgcgcttcctcaacacgc
tgggtacgcactggaacatttctttgttccactatcgcagccatggcaccgactacgggc
gcgtactggcggcgttcgaactcggcgaccatgaaccggatttcgaaacccggctaaatg
agctgggctacgattgccacgacgaaaccaataatccggcgttcaggttctttttggcgg
gttagggaaaaatgcctgatagcgcttcgcttatcaggcctacccgcgcgacaacgtcat
ttgtggttcggcaaaatcctccagaacgcctcaatcagcggctcatgcagccgctttttt
tgtgcacacacgcccagttcaaacggcgttttctcatcgctgcgatctaaaatcattacc
cggttgcgtacaggctccgggctgttttccagcaccacttccggcaacagcgccacacca
cagccgagcgccaccatcgataccatcgcttcatgcccgccaaccgtggcgtaaatcatc
gggttgctgattttattgcgtcgaaaccacagttcaatgcggcggcgtaccggcccctga
tcggccataataaacggcaccgttgaccagtcgggcttttcgacagatacctgattacgc
accgggcagggcagcgcgggggcaatcagcactactgccagattctccagcatcgaaaac
gccacagcgccgggtagcgtctccg


  Assignments for Essentially Identical Proteins

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  Functional Coupling

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  Attributes

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  Protein Families

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