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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|1125636.3.peg.4304: Escherichia coli 2854350

This feature in The SEED Viewer

NCBI Taxonomy Id: 1125636

Current Assignment: UPF0438 protein YifE
Translate Function Assignments



Context on contig APZL01000139 from base 87 to 6802 (6716 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
rna.107 87 206 120 +           5S RNA  
rna.108 259 332 74 + 52         tRNA-Asp-GTC  
rna.109 344 416 73 + 11         tRNA-Trp-CCA  
4303 1354 515 840 - 98         HTH-type transcriptional regulator hdfR locus|EC2854350_4132, protein_id|END37814.1, gi|477055050
4304 1473 1811 339 + 118         UPF0438 protein YifE locus|EC2854350_4133, protein_id|END37815.1, gi|477055051
4305 3356 1836 1521 - 24         MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein locus|EC2854350_4134, protein_id|END37816.1, gi|477055052
4306 3947 5593 1647 + 590     1: 1   Acetolactate synthase large subunit (EC 2.2.1.6) locus|EC2854350_4135, protein_id|END37817.1, gi|477055053
4307 5590 5853 264 + -4     1: 1 dlit(3550695) Acetolactate synthase small subunit (EC 2.2.1.6) gene_name|ilvM, locus|EC2854350_4136, protein_id|END37818.1, gi|477055054
4308 5873 6802 930 + 19     2: 2 1 dlit(9163511)
dlit(3550695)
dlit(3897211)
dlit(3069843)
Branched-chain amino acid aminotransferase (EC 2.6.1.42) gene_name|ilvE, locus|EC2854350_4137, protein_id|END37819.1, gi|477055055

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1125636.3.peg.4304 UPF0438 protein YifE
MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNELDLGKREPVTEEEKLF
VAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTDSDD

MD5 = e9f588040b00f0a765a09edb29d4dc3c


  DNA Sequence

>fig|1125636.3.peg.4304 UPF0438 protein YifE
atggcggaaagctttacgacgactaatcgatatttcgacaataaacattatccacgtgga
ttctctcgtcatggtgatttcaccatcaaagaggcacaactgcttgagcgtcatggttat
gccttcaatgagttggatcttggcaaacgcgagccggttaccgaggaagagaaactcttc
gtagcagtatgccgtggcgaacgtgagccagtgacagaagcagaacgcgtgtggtccaag
tatatgacgcgtattaagcgtccaaaacgttttcacaccctttccggcggtaaaccgcag
gttgaaggtgctgaagactacaccgattctgatgattaa


  DNA with Flanking Sequence

>fig|1125636.3.peg.4304 UPF0438 protein YifE
caattcgcgcttcgaactgtaagcctgtatgggcatcctgattttgatacaagcgtccca
gccactgattaagcatacattcccacaacgaggcgctggcaccgatagaaaactcgttat
gtcgtgaggtatgcgccacctccttgcgggcggcctgccaggtgctcatgagcgtttctg
cataaggcagtagtttttcaccggcagcggttaaacggatattgtttctgtggcggggga
aaaggttcacacccagttgattttccagttgtctgattcgaaagctcactgctgactggg
tcagatagagcgattcagccgctcgaccaaagtgacgcgttcggctaacttccaggaaag
tttttaacaattccgtatccacagtgctctccgcaaaattatttgtcgttatgatttaaa
tgttttgttttacactctgtcaagcgtaactaatactccgcgccataactagctcggtca
aagaattaggagcgtgcaggatggcggaaagctttacgacgactaatcgatatttcgaca
ataaacattatccacgtggattctctcgtcatggtgatttcaccatcaaagaggcacaac
tgcttgagcgtcatggttatgccttcaatgagttggatcttggcaaacgcgagccggtta
ccgaggaagagaaactcttcgtagcagtatgccgtggcgaacgtgagccagtgacagaag
cagaacgcgtgtggtccaagtatatgacgcgtattaagcgtccaaaacgttttcacaccc
tttccggcggtaaaccgcaggttgaaggtgctgaagactacaccgattctgatgattaat
aaaaagggcgaaatgccctttttttatgtcagtagtttttgcagatggatgagcaaacgg
tcaatcgcacgatagctaactgcctcctgcaaatgctgacgtgtgataatgtcagactga
tcaatatcagcaatggttcgtgcaactttcaataaccgctgccaggcacgaatcgataac
cccagatggatcagtgttccttccaaccacatcgcatcttcgctctcaagtttgcagaat
tggcgtatttccggactatccagccaggcattcagtttattctgccgcttaaattggcgc
tctctggcggccattacgcgttgtttaacggtggcgctgctttctcccggcactaccgtt
ttactcaaaatgccggggggtggtaatgggatctccagtgagagatcgaagcggtcgaga
aagggccccgagagccggttgagataacgtaatgtctgttctggcgtgcagcggttatgg
tttccctgataatgtccgg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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