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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|1116050.3.peg.3550: Escherichia coli P0299917.4

This feature in The SEED Viewer

NCBI Taxonomy Id: 1116050

Current Assignment: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
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Context on contig APYN01000064 from base 114263 to 126899 (12637 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3544 114263 114430 168 +           Uncharacterized protein YhaL locus|ECP02999174_3613, protein_id|ENC53850.1, gi|476966122
3545 114566 114420 147 - -11         FIG00643765: hypothetical protein  
3546 115952 114642 1311 - 75     2: 1 3   L-Cysteine Desulfidase locus|ECP02999174_3614, protein_id|ENC53851.1, gi|476966123
3547 117311 115980 1332 - 27         Cysteine permease CyuP gene_name|yhaO, locus|ECP02999174_3615, protein_id|ENC53852.1, gi|476966124
3548 118950 117586 1365 - 274     1: 5   L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) locus|ECP02999174_3616, protein_id|ENC53853.1, gi|476966125
3549 119411 119022 390 - 71     1: 4 dlit(9484901) 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) gene_name|tdcF, locus|ECP02999174_3617, protein_id|ENC53854.1, gi|476966126
3550 121719 119425 2295 - 13         2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54) locus|ECP02999174_3618, protein_id|ENC53855.1, gi|476966127
3551 122961 121753 1209 - 33         Acetate kinase (EC 2.7.2.1) @ Propionate kinase (EC 2.7.2.15) locus|ECP02999174_3619, protein_id|ENC53856.1, gi|476966128
3552 124318 122987 1332 - 25         L-threonine transporter, anaerobically inducible locus|ECP02999174_3620, protein_id|ENC53857.1, gi|476966129
3553 125329 124340 990 - 21     1: 2 dlit(9484901) Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) locus|ECP02999174_3621, protein_id|ENC53858.1, gi|476966130
3554 126366 125428 939 - 98       dlit(9484901) Threonine catabolic operon transcriptional activator TdcA locus|ECP02999174_3622, protein_id|ENC53859.1, gi|476966131
3555 126555 126899 345 + 188         Threonine catabolic operon transcriptional activator TdcR locus|ECP02999174_3623, protein_id|ENC53860.1, gi|476966132

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1116050.3.peg.3550 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWE
KVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGI
NMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRG
RIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQE
MAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGV
LNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFR
YLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYA
IACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKV
MDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDS
LSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYR
NAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLP
FTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREML
LDAIEHPEKYPTLTIRVSGYAVRFNALTREQQQDVISRTFTQAL

MD5 = 5d9b172ba7f9c9c17084544287cf8384


  DNA Sequence

>fig|1116050.3.peg.3550 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
atgaaggtagatattgataccagcgataagctgtacgccgacgcatggcttggctttaaa
ggtacggactggaaaaacgaaattaatgtccgcgattttattcaacataactatacaccg
tatgaaggcgatgaatctttcctcgccgaagcgacgcctgccaccacggaattgtgggaa
aaagtaatggaaggcatccgtatcgaaaatgcaacccacgcgccggttgatttcgatacc
aatattgccaccacaattaccgctcatgatgcgggatatattaaccagccgctggaaaaa
attgttggcctgcaaacggatgcgccgttgaaacgtgcgctacacccgttcggtggcatt
aatatgattaaaagttcattccacgcctatggccgagaaatggacagtgaatttgaatat
ctgtttaccgatctgcgtaaaacccataaccagggcgtatttgatgtttactcaccggat
atgctgcgctgccgtaaatctggcgtgctgaccggtttaccagatggctatggccgtggg
cgcattatcggtgactatcgccgcgtagcgctgtatggcatcagttatctggtacgtgaa
cgcgaactgcaatttgccgatctccagtctcgtctggaaaaaggcgaggatctggaagcc
accatccgtctgcgtgaggagctggcagagcatcgtcatgcgctgttgcagattcaggaa
atggcggcgaaatatggctttgatatctctcgcccggcgcagaatgcgcaggaagcggtg
cagtggctctacttcgcttatctggcggcagtgaaatcgcaaaatggcggcgcgatgtcg
ctgggccgcacggcatcgttcctcgatatctacattgagcgcgactttaaagctggcgta
ctcaatgagcagcaggcacaggaactgatcgatcacttcatcatgaagatccgtatggta
cgcttcctgcgtacaccggaatttgattcgctgttctccggcgacccaatctgggcgacg
gaagtgatcggcgggatggggctggacggtcgtacgctggtgaccaaaaactccttccgc
tatttgcacaccctgcacactatggggccggcaccggaacctaacctgaccattctttgg
tcggaagaattaccgattgccttcaaaaaatatgccgcgcaggtgtcgatcgtcacctct
tccttgcagtatgaaaatgacgatctgatgcgtactgacttcaacagcgacgattacgcg
attgcctgctgcgtcagcccaatggtgattggtaagcaaatgcagttctttggtgcacgc
gctaacctggcgaaaacgctgctctacgcaattaacggcggggtggacgagaagctgaag
attcaggtcgggccgaaaacagcaccgctgatggacgacgtgctggattacgacaaagtg
atggacagcctcgatcacttcatggactggctggcggtgcagtacatcagcgcgctgaat
atcattcactacatgcacgacaagtacagctacgaagcttcgctgatggcgctgcacgat
cgtgatgtctatcgcactatggcatgcggcatcgcgggcctgtcggtggcgacggactcc
ctgtctgccatcaaatatgcccgcgtgaaaccaatccgtgacgaaaacggcctggcggtg
gactttgaaatcgacggtgaatatccgcagtacggcaacaacgacgagcgcgtagacagc
attgcctgcgacctggttgaacgctttatgaagaaaattaaagcgctgccaacctatcgc
aacgccgtccctacccagtcgattctgactatcacttctaacgtggtgtacggccagaaa
accggtaatacgccggacggtcgtcgcgccggaacaccgttcgcgccgggcgctaacccg
atgcatggtcgtgaccgcaaaggtgccgtggcctcattgacgtcggtggcgaaactgccg
ttcacctacgccaaagatgggatctcgtacaccttctcaatcgttcctgcggcgctgggc
aaagaagatccagtacgtaaaaccaaccttgtcggcctgctggatgggtatttccaccac
gaagcggatgtcgaaggcggtcaacacctcaacgtcaacgtaatgaatcgggaaatgctg
ctggatgccatcgagcacccggaaaaatatcctaccctgacaatccgtgtctctggctac
gccgtgcgcttcaacgcactgacccgtgaacagcaacaggatgttatttcacgtactttt
acccaggcgctctga


  DNA with Flanking Sequence

>fig|1116050.3.peg.3550 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
tcgccagccaaaccaaccagagcctgggtgacctggaacgcgtagtgaataaagagtcgg
gattattaggtatttccggtctttcttcggatttacgtgttctggaaaaagcctggcatg
aaggtcacgaacgcgcgcaactggcaattaaaacctttgttcaccgaattgcccgtcata
ttgccggacacgcagcttcattacgtcgcctggatggaattatattcaccggcggaatag
gagagaattcaagcttaattcgtcgtctggtcatggaacatttggctgtattaggcgtag
agattgatacagaaatgaataatcgctctaactcctgtggtgagcgaattgtttccagtg
aaaatgcgcgtgtcatttgtgccgttattccgactaacgaagaaaaaatgattgctttgg
atgccattcatttaggcaaagttaacgcgcccgcagaatttgcataatttagttgaagta
ttgtagagagattatttttcatgaaggtagatattgataccagcgataagctgtacgccg
acgcatggcttggctttaaaggtacggactggaaaaacgaaattaatgtccgcgatttta
ttcaacataactatacaccgtatgaaggcgatgaatctttcctcgccgaagcgacgcctg
ccaccacggaattgtgggaaaaagtaatggaaggcatccgtatcgaaaatgcaacccacg
cgccggttgatttcgataccaatattgccaccacaattaccgctcatgatgcgggatata
ttaaccagccgctggaaaaaattgttggcctgcaaacggatgcgccgttgaaacgtgcgc
tacacccgttcggtggcattaatatgattaaaagttcattccacgcctatggccgagaaa
tggacagtgaatttgaatatctgtttaccgatctgcgtaaaacccataaccagggcgtat
ttgatgtttactcaccggatatgctgcgctgccgtaaatctggcgtgctgaccggtttac
cagatggctatggccgtgggcgcattatcggtgactatcgccgcgtagcgctgtatggca
tcagttatctggtacgtgaacgcgaactgcaatttgccgatctccagtctcgtctggaaa
aaggcgaggatctggaagccaccatccgtctgcgtgaggagctggcagagcatcgtcatg
cgctgttgcagattcaggaaatggcggcgaaatatggctttgatatctctcgcccggcgc
agaatgcgcaggaagcggtgcagtggctctacttcgcttatctggcggcagtgaaatcgc
aaaatggcggcgcgatgtcgctgggccgcacggcatcgttcctcgatatctacattgagc
gcgactttaaagctggcgtactcaatgagcagcaggcacaggaactgatcgatcacttca
tcatgaagatccgtatggtacgcttcctgcgtacaccggaatttgattcgctgttctccg
gcgacccaatctgggcgacggaagtgatcggcgggatggggctggacggtcgtacgctgg
tgaccaaaaactccttccgctatttgcacaccctgcacactatggggccggcaccggaac
ctaacctgaccattctttggtcggaagaattaccgattgccttcaaaaaatatgccgcgc
aggtgtcgatcgtcacctcttccttgcagtatgaaaatgacgatctgatgcgtactgact
tcaacagcgacgattacgcgattgcctgctgcgtcagcccaatggtgattggtaagcaaa
tgcagttctttggtgcacgcgctaacctggcgaaaacgctgctctacgcaattaacggcg
gggtggacgagaagctgaagattcaggtcgggccgaaaacagcaccgctgatggacgacg
tgctggattacgacaaagtgatggacagcctcgatcacttcatggactggctggcggtgc
agtacatcagcgcgctgaatatcattcactacatgcacgacaagtacagctacgaagctt
cgctgatggcgctgcacgatcgtgatgtctatcgcactatggcatgcggcatcgcgggcc
tgtcggtggcgacggactccctgtctgccatcaaatatgcccgcgtgaaaccaatccgtg
acgaaaacggcctggcggtggactttgaaatcgacggtgaatatccgcagtacggcaaca
acgacgagcgcgtagacagcattgcctgcgacctggttgaacgctttatgaagaaaatta
aagcgctgccaacctatcgcaacgccgtccctacccagtcgattctgactatcacttcta
acgtggtgtacggccagaaaaccggtaatacgccggacggtcgtcgcgccggaacaccgt
tcgcgccgggcgctaacccgatgcatggtcgtgaccgcaaaggtgccgtggcctcattga
cgtcggtggcgaaactgccgttcacctacgccaaagatgggatctcgtacaccttctcaa
tcgttcctgcggcgctgggcaaagaagatccagtacgtaaaaccaaccttgtcggcctgc
tggatgggtatttccaccacgaagcggatgtcgaaggcggtcaacacctcaacgtcaacg
taatgaatcgggaaatgctgctggatgccatcgagcacccggaaaaatatcctaccctga
caatccgtgtctctggctacgccgtgcgcttcaacgcactgacccgtgaacagcaacagg
atgttatttcacgtacttttacccaggcgctctgacgccggaggatgtatgaaaaagatt
atcgaaacgcaacgtgccccaggcgcaatcggcccttatgttcagggcgttgatttaggc
agcatggtcttcacctccgggcaaattccggtttgcccgcagaccggtgagatcccggct
gatgtgcaagatcaggcgcgtttaagcctcgaaaacgtcaaagcgatcgtggttgctgcc
gggctgagcgtgggcgatatcatcaagatgaccgtgttcatcaccgatctgaatgatttt
gccaccatcaatgaagtctataagcagttcttcgatgagcatcaggcgacctacccgacc
cggagctgtgtgcaggttgcgcgtttgccgaaagatgtgaagctggaaattgaagctatc
gcagtacgtagtgcgtaaagcctcgtgagcgggacggtcgcaaggtcgttccgctccact
tcactgaacggcaatccgagggtgtggatatgattagtgcattcgatattttcaa


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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