The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|1116050.3.peg.3547: Escherichia coli P0299917.4

This feature in The SEED Viewer

NCBI Taxonomy Id: 1116050

Current Assignment: Cysteine permease CyuP
Translate Function Assignments



Context on contig APYN01000064 from base 110248 to 122961 (12714 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3539 110248 111234 987 +           Glutathione S-transferase, omega (EC 2.5.1.18) locus|ECP02999174_3608, protein_id|ENC53845.1, gi|476966117
3540 111527 111892 366 + 292         Inner membrane protein YhaI gene_name|yhaH, locus|ECP02999174_3609, protein_id|ENC53846.1, gi|476966118
3541 112134 112490 357 + 241         Inner membrane protein YhaI gene_name|yhaI, locus|ECP02999174_3610, protein_id|ENC53847.1, gi|476966119
3542 113437 112541 897 - 50         Transcriptional regulator YhaJ, LysR family locus|ECP02999174_3611, protein_id|ENC53848.1, gi|476966120
3543 113641 114243 603 + 203         Pirin-like protein YhaK gene_name|yhaK, locus|ECP02999174_3612, protein_id|ENC53849.1, gi|476966121
3544 114263 114430 168 + 19         Uncharacterized protein YhaL locus|ECP02999174_3613, protein_id|ENC53850.1, gi|476966122
3545 114566 114420 147 - -11         FIG00643765: hypothetical protein  
3546 115952 114642 1311 - 75     2: 3 1   L-Cysteine Desulfidase locus|ECP02999174_3614, protein_id|ENC53851.1, gi|476966123
3547 117311 115980 1332 - 27         Cysteine permease CyuP gene_name|yhaO, locus|ECP02999174_3615, protein_id|ENC53852.1, gi|476966124
3548 118950 117586 1365 - 274     1: 4   L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) locus|ECP02999174_3616, protein_id|ENC53853.1, gi|476966125
3549 119411 119022 390 - 71     1: 2 dlit(9484901) 2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10) gene_name|tdcF, locus|ECP02999174_3617, protein_id|ENC53854.1, gi|476966126
3550 121719 119425 2295 - 13         2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54) locus|ECP02999174_3618, protein_id|ENC53855.1, gi|476966127
3551 122961 121753 1209 - 33         Acetate kinase (EC 2.7.2.1) @ Propionate kinase (EC 2.7.2.15) locus|ECP02999174_3619, protein_id|ENC53856.1, gi|476966128

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1116050.3.peg.3547 Cysteine permease CyuP
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQV
GLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYF
VMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKI
STGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSP
MVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISA
LAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKI
NENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYK
GMSLYLIIVTGLLLCVSPFLAFS

MD5 = a33e6b3bc0e4babe7abbd6b9d416d229


  DNA Sequence

>fig|1116050.3.peg.3547 Cysteine permease CyuP
atggaaattgcatcgaataaaggcgtcattgcagacgcttcgaccccggcgggtcgtgct
ggaatgagtgagagcgagtggcgagaagcgatcaaattcgacagtactgacaccggctgg
gtgattatgagtatcgggatggcgattggcgcggggattgtttttctcccggtgcaggtc
ggtttgatgggattgtgggtatttttgctctcatcggtgattggttacccggcaatgtat
ctgtttcagcggttgtttattaatacgctggcagaatcaccagaatgtaaagattacccg
agtgtcattagcggttatttaggtaaaaactggggcatcctgttaggtgcgctctatttc
gtaatgctggtgatttggatgttcgtctattccaccgccatcaccaacgatagtgcttcc
tatctgcataccttcggcgtgacggaagggttgctgtcagacagtcccttttatggtctg
gtactgatttgcattctggtggcgatctcttcacgcggcgagaaattgttattcaaaatt
tcgaccggcatggtgctgaccaagctgctggtggtcgcggcgctgggcgtgtcgatggtg
ggaatgtggcatctgtataacgtcggttcgctaccgccgctggggctgctggtgaaaaac
gccattattacgctgccgtttaccctgacgtcgattctgtttatccagacgttaagcccg
atggtgatctcttatcgctcgcgggaaaaatcaattgaagtggcgcggcataaagcattg
cgggcaatgaatatcgcgtttggcattttgtttgtcaccgtctttttctacgccgtgtcg
ttcacgctggcgatgggacatgacgaagcggtaaaagcctatgagcagaatatttccgcg
ctggcgattgccgcacagtttattagcggtgacggcgcagcgtgggtgaaagtggtcagc
gtcattctcaatatctttgctgtcatgactgcattctttggcgtctatttaggctttcgc
gaagcaacgcaagggatcgtaatgaacatcctgcgtcgcaagatgcctgccgagaagatt
aacgaaaatcttgttcagcgcggcatcatgattttcgccattttgctggcctggagcgcc
atcgtactgaacgcaccggtgttgagcttcacctctatctgtagcccgattttcggcatg
gtagggtgcctgatcccggcgtggctggtttacaaagtaccggcattgcacaaatacaaa
gggatgtctctgtacctgattatcgtcactggtttgttgctttgtgtttctccgttcctg
gcattttcttga


  DNA with Flanking Sequence

>fig|1116050.3.peg.3547 Cysteine permease CyuP
ctgcgatccggttgccggacaggtacaaatcccgtgcattgaacgtaatgccattaatgc
cgtgaaagcagtaaacgccgcgcggatggcgatgcgccgcacctcggcaccgcgtgtttc
actcgataaagtgatcgagacgatgtatgaaaccggcaaagatatgaacgataaataccg
cgaaacatcacgcggaggactggccattaaagtggtctgcggctgacattgctgtcagct
ttcatccttgggtgcacaaatgtgcaccttttttttgtgatctgccgcaaatagagaatg
aatattctcttgcgattaatttagtagaaaattcttatccatctccgttatttcaaagtc
ttgattgtgaagattttctctgacctcgcgcgtatcatttctttattctaataactcgcc
tgcaaaaacgtagaccgcatatcgccttgatgcggctcggaaaaaaataataagccctac
aaaatattgagcgagaaattatggaaattgcatcgaataaaggcgtcattgcagacgctt
cgaccccggcgggtcgtgctggaatgagtgagagcgagtggcgagaagcgatcaaattcg
acagtactgacaccggctgggtgattatgagtatcgggatggcgattggcgcggggattg
tttttctcccggtgcaggtcggtttgatgggattgtgggtatttttgctctcatcggtga
ttggttacccggcaatgtatctgtttcagcggttgtttattaatacgctggcagaatcac
cagaatgtaaagattacccgagtgtcattagcggttatttaggtaaaaactggggcatcc
tgttaggtgcgctctatttcgtaatgctggtgatttggatgttcgtctattccaccgcca
tcaccaacgatagtgcttcctatctgcataccttcggcgtgacggaagggttgctgtcag
acagtcccttttatggtctggtactgatttgcattctggtggcgatctcttcacgcggcg
agaaattgttattcaaaatttcgaccggcatggtgctgaccaagctgctggtggtcgcgg
cgctgggcgtgtcgatggtgggaatgtggcatctgtataacgtcggttcgctaccgccgc
tggggctgctggtgaaaaacgccattattacgctgccgtttaccctgacgtcgattctgt
ttatccagacgttaagcccgatggtgatctcttatcgctcgcgggaaaaatcaattgaag
tggcgcggcataaagcattgcgggcaatgaatatcgcgtttggcattttgtttgtcaccg
tctttttctacgccgtgtcgttcacgctggcgatgggacatgacgaagcggtaaaagcct
atgagcagaatatttccgcgctggcgattgccgcacagtttattagcggtgacggcgcag
cgtgggtgaaagtggtcagcgtcattctcaatatctttgctgtcatgactgcattctttg
gcgtctatttaggctttcgcgaagcaacgcaagggatcgtaatgaacatcctgcgtcgca
agatgcctgccgagaagattaacgaaaatcttgttcagcgcggcatcatgattttcgcca
ttttgctggcctggagcgccatcgtactgaacgcaccggtgttgagcttcacctctatct
gtagcccgattttcggcatggtagggtgcctgatcccggcgtggctggtttacaaagtac
cggcattgcacaaatacaaagggatgtctctgtacctgattatcgtcactggtttgttgc
tttgtgtttctccgttcctggcattttcttgatttacctgaaattttaaggtttttaata
tgtttgattcgactttaaatccgttatggcagcgttacatcctcgccgttcaggaggaag
taaaaccggcgctgggatgtactgaaccgatttcactggcgctggcggcggcggttgctg
cggcagaactggaaggtccggttgaacgtgtagaagcctgggtttcgccaaatctgatga
agaacggtctgggcgtcaccgttcccggcacgggaatggtggggctgccgattgcggcgg
cgctgggggcgttaggtggaaatgccaacgccgggctggaagtgctgaaagacgcaactg
cgcaggcaattgccgatgccaaagcactgctggcggcggggaaagtctccgttaagatcc
aggaaccttgcaatgaaatcctcttctcacgcgccaaagtctggaacggtgagaagtggg
cgtgtgtcaccatcgtcggcgggcataccaacattgtgcatattgagacgca


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search