The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.382: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig AFXX01000010 from base 50957 to 66735 (15779 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
374 50957 52363 1407 +           hypothetical protein  
375 52360 53106 747 + -4         Putative prohead protease  
376 53121 54323 1203 + 14         Phage major capsid protein #Fam0024  
377 54332 54679 348 + 8         hypothetical protein  
378 54682 55212 531 + 2         hypothetical protein  
379 55209 55607 399 + -4         hypothetical protein  
380 55612 55899 288 + 4         hypothetical protein  
381 55899 56330 432 + -1         hypothetical protein  
382 56344 56943 600 + 13         hypothetical protein  
383 56955 57215 261 + 11         hypothetical protein  
384 57316 57738 423 + 100         hypothetical protein  
385 57735 58061 327 + -4         hypothetical protein  
386 58096 60957 2862 + 34         Phage minor tail protein  
387 60973 61878 906 + 15         hypothetical protein  
388 61885 66735 4851 + 6         Phage tail fiber protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.382 hypothetical protein
MAKDSQGMDLGQVEALVTAAIMIVPYATENKITPEMIAPSKATTELPAAYNRSTACIGLV
KSDGGNQDSRDGDDPIEFLQDGYKKRPLATSLTQTFSPAENNALTRKITIGEPDSNGVYH
VADIIQDAKWMAYEEETFDTGRVHRRAGVMQINDNKPDQQERGSATGRELTVEWMKDPLY
VDPAHPNTRWIESWYDPKA

MD5 = d82254264582045a3142119447c94128


  DNA Sequence

>fig|1074482.3.peg.382 hypothetical protein
atggccaaagacagtcagggcatggatctgggacaggtggaggcgctcgtcaccgcagcc
atcatgatcgtcccgtacgccacagaaaacaaaatcacgccggaaatgatcgcacccagc
aaggcgacgacggaacttccggccgcatacaatcggtcgaccgcatgcatcggactcgtc
aagtccgacggcggcaatcaggattcgcgcgacggcgacgatcccatcgagtttttgcag
gacgggtacaagaagcggccgctggcgaccagcctcacgcagactttcagcccggccgaa
aacaatgcgctgacccgcaagatcaccatcggcgagccggactccaatggcgtctaccac
gtggccgacatcatccaggatgcgaaatggatggcgtacgaggaggagacgttcgacacc
gggcgtgtccaccgtcgcgccggcgtcatgcagattaacgacaacaaacctgaccagcag
gagcgtggctcggccaccggccgcgagctcaccgtcgaatggatgaaggacccgctgtac
gtggatcctgcgcatccgaacacgcgctggatcgaaagctggtacgacccaaaagcgtga


  DNA with Flanking Sequence

>fig|1074482.3.peg.382 hypothetical protein
tcgtggaggcgcagaccggcaatctggccaagtctttgaggaaggcgagggtctgatggc
aagcgtcatcccacccgatctcgagcttttcctcaccggctggctgcgctccaatatcac
ggacgtcgcgggcctgcaggtcggaaaccgcatcccggacgattacgacggctcctatcc
gctcgtggtcgtgcgtgatgacggcggcacgcaatccgccgaccgcgtgacgttcgacag
gtcgataggcgtcaacgtgctcggatggacgcgcaacgacacgaaaccatgccgcgatct
ggcggcctgcgtgtacggcgtgctgaccggcgagcccggcatcctcatcggatttgccga
aggcagccgcatctgcgccgtcgtgtctgacggctgcaacggcccgtacccggtcggcga
ggacgcggcatggtgccgctactacatgaccgtcgaatattcgacggccggaatcagaca
accataaggaaggaatcaccatggccaaagacagtcagggcatggatctgggacaggtgg
aggcgctcgtcaccgcagccatcatgatcgtcccgtacgccacagaaaacaaaatcacgc
cggaaatgatcgcacccagcaaggcgacgacggaacttccggccgcatacaatcggtcga
ccgcatgcatcggactcgtcaagtccgacggcggcaatcaggattcgcgcgacggcgacg
atcccatcgagtttttgcaggacgggtacaagaagcggccgctggcgaccagcctcacgc
agactttcagcccggccgaaaacaatgcgctgacccgcaagatcaccatcggcgagccgg
actccaatggcgtctaccacgtggccgacatcatccaggatgcgaaatggatggcgtacg
aggaggagacgttcgacaccgggcgtgtccaccgtcgcgccggcgtcatgcagattaacg
acaacaaacctgaccagcaggagcgtggctcggccaccggccgcgagctcaccgtcgaat
ggatgaaggacccgctgtacgtggatcctgcgcatccgaacacgcgctggatcgaaagct
ggtacgacccaaaagcgtgacggcggtggccgtgacttcggctgacggcaatacgaggcc
gtcggtcgtccaaggcgcgaagctcgcgctcaaggccgtcgccacccatgtggacaagac
caccgtggacgtgaccggacaggccatgttcacatccaaggatgcaggcgtggcgaccgt
cgatggcggcacgctcaccgccgtcaaggccgggagcgcgaggatcaacgccacgtatgg
cggcgtgacctcacccgatctgacggtcactgtcaccgcacgcgccgcctgaccggcgga
cgaaaatcttcccggaccgcctatctcgcctgtctgcgcggtccgggaaccctttttacc
gcaggcaggcgaaaagcagataggacaagacaatgacttccacttccaccgacttcaagc
cgaccgtcgaggatttcgaccagtggacggaagaaaacgacgaggaggcgttcgcctcca
tcgcacaaaattacaaggtgcgccacatcatcaagggcga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search