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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|1074482.3.peg.376: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: Phage major capsid protein #Fam0024
Translate Function Assignments


Context on contig AFXX01000010 from base 48590 to 60957 (12368 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
371 48590 48853 264 +           hypothetical protein  
372 48946 49308 363 + 92         hypothetical protein  
373 49322 50935 1614 + 13         gp2, terminase  
374 50957 52363 1407 + 21         hypothetical protein  
375 52360 53106 747 + -4         Putative prohead protease  
376 53121 54323 1203 + 14         Phage major capsid protein #Fam0024  
377 54332 54679 348 + 8         hypothetical protein  
378 54682 55212 531 + 2         hypothetical protein  
379 55209 55607 399 + -4         hypothetical protein  
380 55612 55899 288 + 4         hypothetical protein  
381 55899 56330 432 + -1         hypothetical protein  
382 56344 56943 600 + 13         hypothetical protein  
383 56955 57215 261 + 11         hypothetical protein  
384 57316 57738 423 + 100         hypothetical protein  
385 57735 58061 327 + -4         hypothetical protein  
386 58096 60957 2862 + 34         Phage minor tail protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.376 Phage major capsid protein #Fam0024
MNLMDKLAAEKKAAQSILAKGMDNITEKEQEELKQRYAEAKKLQERIDLFKEAGEGLDKL
AGTSKTEHKGVEAQTLGDFYVKSLKEKGLSVLATKGGLFSTPEFKAASDTQATGGASGAY
APFLTQTDQNGVWPYERPLVIADLFASGTMSGTTIKYPVYGAFEGNATTVAEGGQKPQIH
LPDPTWVSDSLHEIAAWWKITDDMADDLPFVVSEINQHAQYNLKLQEEIQLLSGNGTDPN
LRGILNREIQTKAQANDSDPDRIFAATTDIATATGFSADAVVINPADYQTIRLSKDANGQ
YFGGGFFAGQYGNGGIMQNPPLWGLRTVVTEAMTKGTVLVGAFKAGGTIYRKGGLTVEST
NSHENDFTNDKITFRVKERLALQVKYPKAFVKVSLGKAGK

MD5 = c0aa7f3dd6f8cc8541827028f66938b7


  DNA Sequence

>fig|1074482.3.peg.376 Phage major capsid protein #Fam0024
atgaacctcatggacaagctcgccgccgagaagaaggcggcacagtccatcctcgccaag
ggaatggataacatcaccgaaaaggagcaggaggagctgaagcagcgttacgccgaggcg
aagaagctgcaggaacgcatcgacctgttcaaggaggccggcgaaggactcgacaagctc
gccggcacgtccaagaccgaacacaagggcgtcgaggcgcagaccctcggcgacttctac
gtcaagtccctgaaggaaaaggggttgagcgtgctcgccaccaagggaggcctgttctcc
actccggaattcaaggccgcttccgacactcaggccacaggcggagcgtccggagcctac
gcgccgttcctcacccagaccgaccagaacggcgtatggccgtacgagcgtccgctcgtc
atcgccgacctgttcgcgtccggcaccatgagcggcaccaccatcaaatacccggtctac
ggcgcgttcgaaggcaacgccaccaccgtcgccgagggcgggcagaagccgcagatccac
cttccggacccgacttgggtgtccgacagcctgcacgagatcgccgcatggtggaagatc
accgacgacatggccgacgacctgccgttcgtcgtgtccgagatcaaccagcacgcccaa
tacaatctgaagctgcaggaggagattcagctcctgtccggcaacggcaccgacccgaat
ctcaggggcattctgaaccgcgaaatccagaccaaggcgcaggccaacgattccgacccc
gaccgcatcttcgcggccaccacggatatcgccaccgcgaccggcttctccgccgacgcc
gtggtcatcaaccctgccgactatcagacaatccgcctgtccaaggatgcgaacggccag
tatttcggcggtggcttcttcgccggacagtacggcaacggcggcatcatgcagaacccg
ccgctgtggggactgcgcaccgtggtcaccgaggcgatgaccaagggaaccgtgctcgtc
ggcgcgttcaaggcaggcggcaccatctaccgcaagggcggtctgaccgtcgaatccacc
aacagccacgaaaacgacttcaccaacgacaagatcacgttccgagtcaaggaacgcctc
gccctgcaggtcaagtaccccaaggctttcgtcaaggtgtccctcggcaaggccggaaag
tga


  DNA with Flanking Sequence

>fig|1074482.3.peg.376 Phage major capsid protein #Fam0024
gtcacggcccgcctcgaccttgacctgccggaaggcaagcgcgcgtatgagcttctgcag
cgtggactcatccatcagatgagcatcggcttcctcgccgaggagaccgcgttcgtgcag
gacggcaagagctcgtgggacggataccgtgagattcgccagctgaaactgttcgagatt
tcccttgtgcaggtggccgcgaatcagggcgcggaggtgcttgaagtgaagagcggacgt
gcgatcagcgcttcgaacgaaagcaagctccgcgcggcgctcgacagtctgcatgaggtg
cttgacggcatcgactccgacaacaggaagccggacgatgacgcaaccgacgattccacg
gatgattccagcgatcagccagacgattccacggatgacccgaagaggaaagaccagaaa
agctttgacccgcagtgggccaaggaataccaaaccatcagcgacttcttctcgctgcaa
aattaaccgaaaggagcgccatgaacctcatggacaagctcgccgccgagaagaaggcgg
cacagtccatcctcgccaagggaatggataacatcaccgaaaaggagcaggaggagctga
agcagcgttacgccgaggcgaagaagctgcaggaacgcatcgacctgttcaaggaggccg
gcgaaggactcgacaagctcgccggcacgtccaagaccgaacacaagggcgtcgaggcgc
agaccctcggcgacttctacgtcaagtccctgaaggaaaaggggttgagcgtgctcgcca
ccaagggaggcctgttctccactccggaattcaaggccgcttccgacactcaggccacag
gcggagcgtccggagcctacgcgccgttcctcacccagaccgaccagaacggcgtatggc
cgtacgagcgtccgctcgtcatcgccgacctgttcgcgtccggcaccatgagcggcacca
ccatcaaatacccggtctacggcgcgttcgaaggcaacgccaccaccgtcgccgagggcg
ggcagaagccgcagatccaccttccggacccgacttgggtgtccgacagcctgcacgaga
tcgccgcatggtggaagatcaccgacgacatggccgacgacctgccgttcgtcgtgtccg
agatcaaccagcacgcccaatacaatctgaagctgcaggaggagattcagctcctgtccg
gcaacggcaccgacccgaatctcaggggcattctgaaccgcgaaatccagaccaaggcgc
aggccaacgattccgaccccgaccgcatcttcgcggccaccacggatatcgccaccgcga
ccggcttctccgccgacgccgtggtcatcaaccctgccgactatcagacaatccgcctgt
ccaaggatgcgaacggccagtatttcggcggtggcttcttcgccggacagtacggcaacg
gcggcatcatgcagaacccgccgctgtggggactgcgcaccgtggtcaccgaggcgatga
ccaagggaaccgtgctcgtcggcgcgttcaaggcaggcggcaccatctaccgcaagggcg
gtctgaccgtcgaatccaccaacagccacgaaaacgacttcaccaacgacaagatcacgt
tccgagtcaaggaacgcctcgccctgcaggtcaagtaccccaaggctttcgtcaaggtgt
ccctcggcaaggccggaaagtgaggcgagccgtgaagcagtatcggctggccgacgcatc
caaggccaaggtggacgcttcgacgtacatcgaggacgtgctcttcgtggacggcaacga
caatccggtgaacgtcaccggcggcgccactgccactccgtatgtgcttcccgccgccgc
cgagaacactcttggtggcgtgaagctggcgaatgtcacgatctccggcactgcgaacgc
ctccgtcgcggctgcggcttccaccgccccgacgaaggcggagtacgacgcgctcgtgac
cgcgtacaacgatttggcgaggcgtgtcaatgcgcttgtggctggtcttgtggctgctgg
cagtgtgaagacgagctgagattggaggtcggcatgagtgatgaagcgaatgtggttcct
gacatgattgccgacccttcggccttcgaggatgacgcgcagtttcggctcagggccgcg
caggcggccatccgccgcgaatgtggctggcatgtcatgccga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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Key
Link Explains Key		 Value


  Protein Families

No protein families found

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