The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.367: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig AFXX01000010 from base 41401 to 52363 (10963 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
354 41401 42246 846 +           Recombinational DNA repair protein RecT (prophage associated)  
355 42246 42416 171 + -1         hypothetical protein  
356 42416 42916 501 + -1         Single-stranded DNA-binding protein  
357 42916 43059 144 + -1         hypothetical protein  
358 43046 43438 393 + -14         hypothetical protein  
359 43441 43944 504 + 2         hypothetical protein  
360 43941 44138 198 + -4         hypothetical protein  
361 44135 44416 282 + -4         hypothetical protein  
362 44413 44742 330 + -4         hypothetical protein  
363 44739 44915 177 + -4         hypothetical protein  
364 45423 46229 807 + 507         hypothetical protein  
365 46214 46447 234 + -16         hypothetical protein  
366 46444 46620 177 + -4         hypothetical protein  
367 46623 46934 312 + 2         hypothetical protein  
368 46931 47158 228 + -4         hypothetical protein  
369 47155 47298 144 + -4         hypothetical protein  
370 47637 48044 408 + 338         hypothetical protein  
371 48590 48853 264 + 545         hypothetical protein  
372 48946 49308 363 + 92         hypothetical protein  
373 49322 50935 1614 + 13         gp2, terminase  
374 50957 52363 1407 + 21         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.367 hypothetical protein
MEHIVQFAIGIDDKAIQNRIEEHAYSDVLDKLTKNAVDSVFAHTNAYSRENMWNGLLGAA
LQSFLEERKDEIIDKAANMLADRFQRTKKYREAMGAVIEKDGE

MD5 = b8d7a95dba5bd4fbd93c9aaf4edeb620


  DNA Sequence

>fig|1074482.3.peg.367 hypothetical protein
atggaacacatcgtgcagttcgccatcggcatcgacgacaaggccattcagaaccgcatc
gaggaacacgcctacagtgacgtgctcgacaagctcaccaaaaacgccgtggacagtgtt
ttcgcgcacaccaacgcgtattcgcgggaaaacatgtggaatggattgctgggggccgct
ttgcaaagcttcctcgaagaacgcaaggacgagatcatcgacaaggccgcgaacatgctc
gccgaccggttccaacgaacgaagaaatatcgggaagccatgggcgctgtcatcgaaaag
gacggtgaatga


  DNA with Flanking Sequence

>fig|1074482.3.peg.367 hypothetical protein
tcctgcaagcgctcggacgcgacaaggaaaccgcccaaccagacgaaacagcatgcacgc
tcgccgccgaactcaaccggaaggaaaaaccatgcccacgaacataacccagaaaaacaa
aaccctgcacgaaatcatcgactggtgcaccgacctcgccaacgagctttgcgacgcacc
ggacggcgacttctacgccaacatcaacgccaacctcataaaggcagacacactggcgat
ggtcatacgccattgccagcacatgctcgaccatcccgacaccatgccggacgagacacc
gaaccaaagcaaggacacgaaatgagaaacgacgaaccgaaaaccatgtacagccatgaa
cgattggaacacgagcgccgcaaggcatggagcgaaggctatgccgccggttggaaagac
caggaatgcgacttcccgcaatatacaagcgaaaacccatacaaggagaccgtcaaaatc
gaaaaggaaggaaagtaatcatggaacacatcgtgcagttcgccatcggcatcgacgaca
aggccattcagaaccgcatcgaggaacacgcctacagtgacgtgctcgacaagctcacca
aaaacgccgtggacagtgttttcgcgcacaccaacgcgtattcgcgggaaaacatgtgga
atggattgctgggggccgctttgcaaagcttcctcgaagaacgcaaggacgagatcatcg
acaaggccgcgaacatgctcgccgaccggttccaacgaacgaagaaatatcgggaagcca
tgggcgctgtcatcgaaaaggacggtgaatgatggacggcattggcacgttggacacaag
catctggtccggctacatcgtccgcccgaagggtgatatgagactgtatacatgccgagt
gtacgaaacgctccaagaggcatcggatgtggcgcaggagcgcgccgactcccgccacag
gccatacgaggtgcgcgtaacctgcgatacttcgcagcgaatcatcaagaccttcaaacc
aaggaaaagcaaatgaagaaaatactcgaaaacatgatcatcaaatggcatcgagccgga
tacacgctcgacgagatcgcgccactcgtgccgcaagtgcccaaagccgcaatcgcggcc
atcatccaccagcacgacaaggagaccagactttgaccgactgccagcactgccacaagc
ccacgaagcaggcggacaatccactctgccagcactgccgcgaagactactggcagctca
tccaccaactcggacacacccaactaccaaccctgcgaagcatcatgctccg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search