The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.363: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig AFXX01000010 from base 39637 to 50935 (11299 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
351 39637 40284 648 +           hypothetical protein  
352 40281 40439 159 + -4         hypothetical protein  
353 40436 41398 963 + -4         hypothetical protein  
354 41401 42246 846 + 2         Recombinational DNA repair protein RecT (prophage associated)  
355 42246 42416 171 + -1         hypothetical protein  
356 42416 42916 501 + -1         Single-stranded DNA-binding protein  
357 42916 43059 144 + -1         hypothetical protein  
358 43046 43438 393 + -14         hypothetical protein  
359 43441 43944 504 + 2         hypothetical protein  
360 43941 44138 198 + -4         hypothetical protein  
361 44135 44416 282 + -4         hypothetical protein  
362 44413 44742 330 + -4         hypothetical protein  
363 44739 44915 177 + -4         hypothetical protein  
364 45423 46229 807 + 507         hypothetical protein  
365 46214 46447 234 + -16         hypothetical protein  
366 46444 46620 177 + -4         hypothetical protein  
367 46623 46934 312 + 2         hypothetical protein  
368 46931 47158 228 + -4         hypothetical protein  
369 47155 47298 144 + -4         hypothetical protein  
370 47637 48044 408 + 338         hypothetical protein  
371 48590 48853 264 + 545         hypothetical protein  
372 48946 49308 363 + 92         hypothetical protein  
373 49322 50935 1614 + 13         gp2, terminase  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.363 hypothetical protein
MSKTIKYVECAHCGETVGTYYVTCPYCGYKLAMRRPTTGMDPLYGMTDDEFYRGLGSM

MD5 = c26547996e14ba36c16b5a5491c63dc3


  DNA Sequence

>fig|1074482.3.peg.363 hypothetical protein
atgagcaagacgatcaagtatgtggaatgcgcccactgcggcgagaccgtcggcacatat
tacgtgacatgcccctactgcgggtacaagctggccatgcgcaggccgacaactggcatg
gacccgctgtatggcatgaccgacgacgaattctaccgagggctcgggagcatgtga


  DNA with Flanking Sequence

>fig|1074482.3.peg.363 hypothetical protein
gtacaagctgatcctctgggaaatgcaggaaaaagcccggatagctgtagcggcacgcga
ctatccgaccggaatgctcgaaccgataccgcaacaaacgttggatgatgctgacacgtt
agcacgcatattccaatgcaagaactacaggaacgacgaaacggagatgtgggaatgagt
atcgcggatgatgaagctgagaaggcgtatccgacccgccactgggatggaacgcatgtc
aaggaacagttttgctgcgacacggacgatttgcaggaagcatacctgcgcggtcgcaac
gcgccacccacgaatgccgagatagaggccgtggcgaaaagactgtgctacctctcacaa
ccgccactctggttcccgaccgagccgccagccgaacaagagaagaacctatggcggaac
atgggcatgtgcgacgcgcaagacgaatggcttgacaaggcacgagacctgctcgaaacc
gcacggaaggcggtaaacgaatgagcaagacgatcaagtatgtggaatgcgcccactgcg
gcgagaccgtcggcacatattacgtgacatgcccctactgcgggtacaagctggccatgc
gcaggccgacaactggcatggacccgctgtatggcatgaccgacgacgaattctaccgag
ggctcgggagcatgtgatggccgaacaaggaaggaaacgagactaaaaatgagcgatttc
actggtgccggtggcgcagcttacatgtcaaaccgcatgaattgggagactccacaggaa
ttgtttgaccagctcgacgcggagtttcacttcacgttagacgcggctagcagcgcaacg
aaccacaagtgccagaaatactatacagccgaagacagcgcatttgatcatgagtggggg
ggggagacggtattctgcaatcctccatacggcaaggcaatcgcggaatgggtgcgcaaa
tgcagcgcagaagccagccgcaaagacaccctcgtcgtcatgctcctgcccgctcgcacc
gacacacgctggttccaacaattcattctcaaccgtgcggaggtcaggttcctcaaaggc
cgactccggttcgagacgaacggcataccgggcggcccggcgccattccccagcatgatc
gtcgtaatgcgcaccggagaaagatgaaggaaggaga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search