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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|1074482.3.peg.354: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: Recombinational DNA repair protein RecT (prophage associated)
Translate Function Assignments


Context on contig AFXX01000010 from base 36539 to 47298 (10760 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
346 36539 36976 438 +           methyltransferase, putative  
347 36973 37182 210 + -4         hypothetical protein  
348 38188 38475 288 + 1005         type II DNA modification methyltransferase, putative  
349 38472 39251 780 + -4         Phage antirepressor protein  
350 39244 39465 222 + -8         hypothetical protein  
351 39637 40284 648 + 171         hypothetical protein  
352 40281 40439 159 + -4         hypothetical protein  
353 40436 41398 963 + -4         hypothetical protein  
354 41401 42246 846 + 2         Recombinational DNA repair protein RecT (prophage associated)  
355 42246 42416 171 + -1         hypothetical protein  
356 42416 42916 501 + -1         Single-stranded DNA-binding protein  
357 42916 43059 144 + -1         hypothetical protein  
358 43046 43438 393 + -14         hypothetical protein  
359 43441 43944 504 + 2         hypothetical protein  
360 43941 44138 198 + -4         hypothetical protein  
361 44135 44416 282 + -4         hypothetical protein  
362 44413 44742 330 + -4         hypothetical protein  
363 44739 44915 177 + -4         hypothetical protein  
364 45423 46229 807 + 507         hypothetical protein  
365 46214 46447 234 + -16         hypothetical protein  
366 46444 46620 177 + -4         hypothetical protein  
367 46623 46934 312 + 2         hypothetical protein  
368 46931 47158 228 + -4         hypothetical protein  
369 47155 47298 144 + -4         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.354 Recombinational DNA repair protein RecT (prophage associated)
MGAIAQQAQGQQMVEMTPKQNLKMMMKKSWPRIASVVGNNISPDRLYQMCVSAINKTPKL
AECSPQSVLSCFMTCSALGLEPSNVDGLGRAYVLPFRNKKTGGMEATFIMGYRGMIDLAR
RSGQLVDISARAVHQGDEFSYSYGLNEDLRHVPCANPGELTHVYMVAHFKDGGHYFLVLN
RQEIEQARARSKSGNFGPWKTDYEAMAKKTAIRRAAPYLPLTVQAQTAAANDDTTPDYGD
VFQPVLEDDGTDEADDVTAEVLEPDMSDTGAEPETEAKDGE

MD5 = c3c13602137846b0ae41f51f0d1814b6


  DNA Sequence

>fig|1074482.3.peg.354 Recombinational DNA repair protein RecT (prophage associated)
atgggagcaatcgcacagcaggcgcagggacagcagatggtcgaaatgacgccgaaacaa
aatctgaaaatgatgatgaagaaaagctggccgcgcatcgccagcgtcgtcggcaacaac
atcagccccgaccgcctctaccagatgtgcgtgtccgcgatcaacaaaacgccaaaactc
gcggaatgctcgccgcaaagcgtgctctcctgcttcatgacctgcagcgcgctcggattg
gaaccgtccaacgtggacggactgggccgcgcctacgtgctgcccttccgcaacaagaag
accggaggcatggaggccacgttcatcatgggctatcgcggcatgatcgacctggcgcgc
cgcagcggccagctcgtggacatcagcgcccgagccgtacaccagggagacgaattctcc
tacagttatggtctcaacgaggatttgcgccacgtgccatgcgccaaccccggcgaactg
acccacgtgtacatggtcgcgcatttcaaggacggtggccactacttcctcgttctgaac
cgtcaggagatcgagcaggcgagggcgcgcagcaagagcggtaatttcggcccgtggaag
accgattacgaggccatggcgaagaagaccgccatccgtcgcgcggcaccgtacctgcct
ttgaccgtgcaggcgcagaccgccgccgccaatgacgacaccacgcccgattacggcgat
gtgttccagccggtgcttgaggatgacggcaccgatgaagccgacgacgtgaccgccgaa
gtcctggagccggacatgtcggacaccggcgccgagcctgagacggaagcaaaggacggt
gagtga


  DNA with Flanking Sequence

>fig|1074482.3.peg.354 Recombinational DNA repair protein RecT (prophage associated)
ccaccttattatctcgcccaagtcgagttctacgcgcttgtaacgggatggacgtgggga
gtcgtgtacgcggccatcggagacgacgagccggtagagattccgttcaaggccgacgtg
gaggatatgggcgcgatcgacaaggccgcagccgacttctggcgtttcgtcaccaccggc
acgccaccgcaattgaccggcggcgacgtgcagaaggcgttcccggaacccgctccggac
atcgtggacgaaagcgacgacgatgacctctacgacctgctcgcaagatacgagagcacg
tccaaccgcgcgaaggaactgaaaaacgagcagaaggcattgcaggagcagatcatcgtg
cgcatcggctcgcatacgggcgtgcgttgcggcaacctccaagccacctacaagccgacg
acccgcaaggaatacgtcgtcaaagccaccacataccgcaaattcgcattcaaatccacc
gaagaaaaggagcaataatcatgggagcaatcgcacagcaggcgcagggacagcagatgg
tcgaaatgacgccgaaacaaaatctgaaaatgatgatgaagaaaagctggccgcgcatcg
ccagcgtcgtcggcaacaacatcagccccgaccgcctctaccagatgtgcgtgtccgcga
tcaacaaaacgccaaaactcgcggaatgctcgccgcaaagcgtgctctcctgcttcatga
cctgcagcgcgctcggattggaaccgtccaacgtggacggactgggccgcgcctacgtgc
tgcccttccgcaacaagaagaccggaggcatggaggccacgttcatcatgggctatcgcg
gcatgatcgacctggcgcgccgcagcggccagctcgtggacatcagcgcccgagccgtac
accagggagacgaattctcctacagttatggtctcaacgaggatttgcgccacgtgccat
gcgccaaccccggcgaactgacccacgtgtacatggtcgcgcatttcaaggacggtggcc
actacttcctcgttctgaaccgtcaggagatcgagcaggcgagggcgcgcagcaagagcg
gtaatttcggcccgtggaagaccgattacgaggccatggcgaagaagaccgccatccgtc
gcgcggcaccgtacctgcctttgaccgtgcaggcgcagaccgccgccgccaatgacgaca
ccacgcccgattacggcgatgtgttccagccggtgcttgaggatgacggcaccgatgaag
ccgacgacgtgaccgccgaagtcctggagccggacatgtcggacaccggcgccgagcctg
agacggaagcaaaggacggtgagtgatggacgagaagattcgcaagtacctgcaatggct
ggacagtaagtgcgccgaagctgaaagagctaaggaattgtgcctggacttctcttacga
cgatgggcgtggggacgcttacggcagggcaaaaggtgaattcatacacatcttcgacgt
gaaggatggtgagtgatggccggagagaccgttatcacgatcgtcggcaatctgaccgcc
gacccggaaacccgcacgactcagaatggtggcacggtctgcaatttcaccatcgccagc
acgccacgccaatacaacagccagtccggccagtgggaggacggtccagcgttgttcctc
cgctgcgccgcttggcgtgacctcgccgcgcattgcgcgcagagcctgtcgaagggcatg
cgcgtgatcgcgcagggacggttgcggcaacactcctatcaagctcaggatggctccaac
cgcatcgtgatcgagatgcaggtggacgagatcggcccgtccctgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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