The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|1074482.3.peg.352: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig AFXX01000010 from base 35330 to 46229 (10900 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
343 35611 35330 282 -           hypothetical protein  
344 35809 35937 129 + 197         hypothetical protein  
345 36000 36173 174 + 62         hypothetical protein  
346 36539 36976 438 + 365         methyltransferase, putative  
347 36973 37182 210 + -4         hypothetical protein  
348 38188 38475 288 + 1005         type II DNA modification methyltransferase, putative  
349 38472 39251 780 + -4         Phage antirepressor protein  
350 39244 39465 222 + -8         hypothetical protein  
351 39637 40284 648 + 171         hypothetical protein  
352 40281 40439 159 + -4         hypothetical protein  
353 40436 41398 963 + -4         hypothetical protein  
354 41401 42246 846 + 2         Recombinational DNA repair protein RecT (prophage associated)  
355 42246 42416 171 + -1         hypothetical protein  
356 42416 42916 501 + -1         Single-stranded DNA-binding protein  
357 42916 43059 144 + -1         hypothetical protein  
358 43046 43438 393 + -14         hypothetical protein  
359 43441 43944 504 + 2         hypothetical protein  
360 43941 44138 198 + -4         hypothetical protein  
361 44135 44416 282 + -4         hypothetical protein  
362 44413 44742 330 + -4         hypothetical protein  
363 44739 44915 177 + -4         hypothetical protein  
364 45423 46229 807 + 507         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.352 hypothetical protein
MRLNFNSKDGVFAIKAESEEEKAQLKTSAPAICNLIIDFFDAEVQEMKATKE

MD5 = 52bba661dce4685e5ad6dbd127dbb35d


  DNA Sequence

>fig|1074482.3.peg.352 hypothetical protein
atgagactcaatttcaatagcaaggatggcgttttcgccatcaaagccgaaagcgaagag
gaaaaagcccaactcaaaacgtcggcacccgccatctgcaatctcatcatcgattttttc
gacgctgaagtccaagaaatgaaggcgacgaaggaatga


  DNA with Flanking Sequence

>fig|1074482.3.peg.352 hypothetical protein
gcgccgtcgaaacgagacctcatcctcgcgcactgcaagaaacgcattgaccaaggccaa
ccgttcgacggcaaggaaaccgccgaagcgctcaacctaagccagaaaacggtcggcaac
attctcggccaactccgcaaggaaggactattgccggccttcgacaagcattcaccacgc
agcaaagcacgggaaaccaccacaaccggaaagaagaaagaaaccatgaccaccacacag
aaactcacagcgaccagcatcaccgcagagaaactcacaccgaccggcatcaccaccgga
accatcagcgtcaggccacaagccacagccgatccacgcgccatcatctccaacgcattg
accggcattttcgacgcagtaagcgcattgcaacgaaccgcattccaagccaacgacaag
gtcgtctacggattcgccacgaaactcctcaacggcgaactcatggacctgaaagccaac
tactcgaaggacgtggcgaaatgagactcaatttcaatagcaaggatggcgttttcgcca
tcaaagccgaaagcgaagaggaaaaagcccaactcaaaacgtcggcacccgccatctgca
atctcatcatcgattttttcgacgctgaagtccaagaaatgaaggcgacgaaggaatgaa
acgtatcccactcaaggacacggaacgctacacgattgaacggttccggcagtgcaagaa
gacggaacgtcatctcgcgtggttgaaaagccgtaaggcgggtgtgggcggttccgacat
gagcacgatcctcggcctgaattccttcaagacaccgtacgaattgtggcttgagaagac
cggccgcgtggaaccggaggacatctcggacaagtgggcgatcgtcaagggcaatgcctt
ggagaacgagctcaggaagcgtttccgcgccaatcatccggaaatgctcgtcacggacgg
caccgacaagcagttcatcatgcgcgggaagccatacctgcgcgcttcccttgacggcat
cctgcaaggtgaggacggaagttttggaatccttgaaatcaaaacggcgagcaaccgtcg
agcgggggactggcatgacgaggacggcagcctccgaatcccaccttattatctcgccca
agtcgagttctacgcgctt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search