The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.340: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig AFXX01000010 from base 29051 to 39465 (10415 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
336 29051 30223 1173 +       2: 6 1   UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)  
337 30326 31864 1539 + 102     5: 5 1 2 4 3   UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)  
338 31924 32898 975 + 59         Cell division protein FtsQ homolog  
339 34056 33568 489 - 669         hypothetical protein  
340 34589 34317 273 - 260         hypothetical protein  
341 35022 34897 126 - 307         hypothetical protein  
342 35128 35259 132 + 105         hypothetical protein  
343 35611 35330 282 - 70         hypothetical protein  
344 35809 35937 129 + 197         hypothetical protein  
345 36000 36173 174 + 62         hypothetical protein  
346 36539 36976 438 + 365         methyltransferase, putative  
347 36973 37182 210 + -4         hypothetical protein  
348 38188 38475 288 + 1005         type II DNA modification methyltransferase, putative  
349 38472 39251 780 + -4         Phage antirepressor protein  
350 39244 39465 222 + -8         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.340 hypothetical protein
MSVDVLVYGAVLGYGENDMIRVYVDGPHDEIDGVFPIMAKTLDPSLSDQDIQSQLAKEYP
SNDLVYAETHKLIESAYIDGDHAFLDAKIN

MD5 = 3ea89ce34a1f7255585faadaabe1e6c1


  DNA Sequence

>fig|1074482.3.peg.340 hypothetical protein
ttgtcggtggacgtattggtctatggcgcagtgcttggatacggggagaacgatatgatc
cgcgtctacgtcgatgggccgcatgatgagatcgacggcgtattccccatcatggcgaag
acgcttgatccgtcgctctccgatcaggacatccaaagtcagctggcgaaggagtatccg
tccaatgatcttgtttacgccgagacgcataagttgatcgagagcgcttatatcgatggc
gatcatgcgtttcttgatgcgaaaatcaactag


  DNA with Flanking Sequence

>fig|1074482.3.peg.340 hypothetical protein
acgacggacgagatggcagaccgcgcgcctgctcatcgacccggcagaactagcattggc
ggaacgcatgtacgacgatgacctatggtcgatagccgatgaactcaacgtgaccacgca
ggtgctcacggactaccgagccacgctcaacacatcgccaaacagaatcaaagaaaggtt
tttcaatgcgtaagaaaatcattgccatcacagcggcgacgcttctcctggcgacggcct
gtggctgcggaagccagcaggagccggcccccacgacggccaagacgccggacgtcagcg
cacagcaggagaagccacaacaacaggcagccgagaagacggcgcagagctttgtggatg
agttcaacgcgaactcctcgacaccgataaccgacgtcgagaaattcacgccgagtgatg
cgaacggcccctattatcggacggagtatcgcaccggcgctttctccgacgcggacgcgc
tccacggaaagctaggtcaattgtcggtggacgtattggtctatggcgcagtgcttggat
acggggagaacgatatgatccgcgtctacgtcgatgggccgcatgatgagatcgacggcg
tattccccatcatggcgaagacgcttgatccgtcgctctccgatcaggacatccaaagtc
agctggcgaaggagtatccgtccaatgatcttgtttacgccgagacgcataagttgatcg
agagcgcttatatcgatggcgatcatgcgtttcttgatgcgaaaatcaactagcggcacc
ttataagaagaatgttaaaacttgtagagtcttatatatgtgtaattgagattacatcat
tcttagggattctattacttcaaattctctccgttgtgtaatttgacttccccgctggaa
tgtgcttataattccggcaacaaaagaaaaggcccttgggactgttccagagtcccaagg
gcagacggaaaaccagctagattctccatgcaccagcatactgcaaggcgtggagggaaa
gacgttggaagagatgggataccagaacgcgcaagccgtatacgacatcagccgcaccgg
aagactggcgaaaaaacgcggagaaaacctcaccgtgtacgccatggcgcaacttgtgct
cggctacatggcgatcaacacctacgactgggaccgcgaacacaaccagccaccggagaa
actgcgcaaggtcaacgcgccgtgccgctactacacgctcggctggcgcgcaatagccga
cgcatacggcatg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search