The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.339: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig AFXX01000010 from base 27817 to 39251 (11435 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
335 27817 29034 1218 +           Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)  
336 29051 30223 1173 + 16     2: 3 1   UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)  
337 30326 31864 1539 + 102     5: 5 1 6 4 2   UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)  
338 31924 32898 975 + 59         Cell division protein FtsQ homolog  
339 34056 33568 489 - 669         hypothetical protein  
340 34589 34317 273 - 260         hypothetical protein  
341 35022 34897 126 - 307         hypothetical protein  
342 35128 35259 132 + 105         hypothetical protein  
343 35611 35330 282 - 70         hypothetical protein  
344 35809 35937 129 + 197         hypothetical protein  
345 36000 36173 174 + 62         hypothetical protein  
346 36539 36976 438 + 365         methyltransferase, putative  
347 36973 37182 210 + -4         hypothetical protein  
348 38188 38475 288 + 1005         type II DNA modification methyltransferase, putative  
349 38472 39251 780 + -4         Phage antirepressor protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|1074482.3.peg.339 hypothetical protein
MGYQNAQAVYDISRTGRLAKKRGENLTVYAMAQLVLGYMAINTYDWDREHNQPPEKLRKV
NAPCRYYTLGWRAIADAYGMILLTPEQAMSDNADGEMEKRENTIRKNISNAWVFLQERGV
IKKLEPASLGKNAGFLLLLGDDEENRAVERWARQCLGLPMIW

MD5 = 6d4c1fd0084f957b767bba59d13184c8


  DNA Sequence

>fig|1074482.3.peg.339 hypothetical protein
atgggataccagaacgcgcaagccgtatacgacatcagccgcaccggaagactggcgaaa
aaacgcggagaaaacctcaccgtgtacgccatggcgcaacttgtgctcggctacatggcg
atcaacacctacgactgggaccgcgaacacaaccagccaccggagaaactgcgcaaggtc
aacgcgccgtgccgctactacacgctcggctggcgcgcaatagccgacgcatacggcatg
attctgctcaccccggaacaagccatgagtgataatgccgacggggaaatggagaaacgc
gagaacaccatccgaaagaacatcagcaacgcatgggtgttccttcaggagcgtggcgtg
atcaagaagctggaacccgcttcgctcggcaagaacgcgggcttcctcctgctgcttggc
gacgacgaggagaaccgggcggtggaacggtgggcacgccaatgcctcggactaccaatg
atctggtga


  DNA with Flanking Sequence

>fig|1074482.3.peg.339 hypothetical protein
cttggatacggggagaacgatatgatccgcgtctacgtcgatgggccgcatgatgagatc
gacggcgtattccccatcatggcgaagacgcttgatccgtcgctctccgatcaggacatc
caaagtcagctggcgaaggagtatccgtccaatgatcttgtttacgccgagacgcataag
ttgatcgagagcgcttatatcgatggcgatcatgcgtttcttgatgcgaaaatcaactag
cggcaccttataagaagaatgttaaaacttgtagagtcttatatatgtgtaattgagatt
acatcattcttagggattctattacttcaaattctctccgttgtgtaatttgacttcccc
gctggaatgtgcttataattccggcaacaaaagaaaaggcccttgggactgttccagagt
cccaagggcagacggaaaaccagctagattctccatgcaccagcatactgcaaggcgtgg
agggaaagacgttggaagagatgggataccagaacgcgcaagccgtatacgacatcagcc
gcaccggaagactggcgaaaaaacgcggagaaaacctcaccgtgtacgccatggcgcaac
ttgtgctcggctacatggcgatcaacacctacgactgggaccgcgaacacaaccagccac
cggagaaactgcgcaaggtcaacgcgccgtgccgctactacacgctcggctggcgcgcaa
tagccgacgcatacggcatgattctgctcaccccggaacaagccatgagtgataatgccg
acggggaaatggagaaacgcgagaacaccatccgaaagaacatcagcaacgcatgggtgt
tccttcaggagcgtggcgtgatcaagaagctggaacccgcttcgctcggcaagaacgcgg
gcttcctcctgctgcttggcgacgacgaggagaaccgggcggtggaacggtgggcacgcc
aatgcctcggactaccaatgatctggtgagcagtgcccatccgtgcccacattttgccca
cgtccttgcggtaattgcagtgatttggagtgaattgcagtgaattgggaagtggcggga
accgttggaaataaaggaaaagccgccatttccggcggcttttgaatcgtggagtcgcgg
ggaatcgaaccccggtccgatgaccgagcccacagtcttctacgtgcgtagtctgctggc
caagttggcggtttttctgcccccatcgctgtcgcagacaactgatggcgagcatatccg
cagtaaaagtcccgatggagccctgaggctcaactccatcagcaagtcttcttaacgacg
ctcagcatcctcccaaagacgaagaggagtgaacggagcggctgctcactggttaatcct
gactaaaaatcaggcagcgagagcgaactcagtgcggttagatttagcacttattctttt
gccggggtcatccacgagcggacccggcgttctcggcacgcttccctgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options
Tool Description
General Tools
Psi-Blast NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred Tool for Predicting Transmembrane regions
TMHMM Prediction of transmembrane helices in proteins
Protein Signals for Gram negative bacteria
Gram negative PSORT Prediction of protein localization sites
Gram negative SignalP Predicts the presence and location of signal peptide cleavage sites
Protein Signals for Gram positive bacteria
Gram positive PSORT Prediction of protein localization sites
Gram positive SignalP Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO Subcellular localization predictor at National Chiao Tung University
ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions
FIG search