The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|1074482.3.peg.337: Bifidobacterium breve DPC 6330

This feature in The SEED Viewer

NCBI Taxonomy Id: 1074482

Current Assignment: UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
Translate Function Assignments


Context on contig AFXX01000010 from base 25223 to 36976 (11754 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
333 25223 26329 1107 +   12 2: 1 6   Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)  
334 26385 27830 1446 + 55 12 2: 3 2   UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)  
335 27817 29034 1218 + -14 16     Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)  
336 29051 30223 1173 + 16 13 2: 4 1   UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)  
337 30326 31864 1539 + 102   5: 7 1 8 5 2   UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)  
338 31924 32898 975 + 59 17     Cell division protein FtsQ homolog  
339 34056 33568 489 - 669         hypothetical protein  
340 34589 34317 273 - 260         hypothetical protein  
341 35022 34897 126 - 307         hypothetical protein  
342 35128 35259 132 + 105         hypothetical protein  
343 35611 35330 282 - 70         hypothetical protein  
344 35809 35937 129 + 197         hypothetical protein  
345 36000 36173 174 + 62         hypothetical protein  
346 36539 36976 438 + 365         methyltransferase, putative  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
BEY_LIP El_Yacoubi_Basma_user UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
4_4_13 El_Yacoubi_Basma_user UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
YggSTF El_Yacoubi_Basma_user UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
YggS_2015 vcrecy UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
gh_DUF179 Hutinet_Geoffrey_user UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)


  Protein Sequence

>fig|1074482.3.peg.337 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
MSQNQPIVLDPTHASFDAAARPADLGPTHFIGIGGAGMSVLAEMLNAEGVPVDGSDRERS
AKTDRLESLGITVEFGQRAENVASASTVVYSSAIKPSNPEIVAANEAGLHVVHRSDILAL
LMNGKRAVTVAGAHGKTTTSSMLAHILVHTGADPSYAIGGSIQGPDGTTLDGGHAGQGDV
LVAEADESDGSFAKYHPTIAIITNAEADHLDHYGDEAHYRAAFVNHAGHATGHVVICADD
PDALAVFQALPADIKAHTVVYGTTPIEQLPDLGGAAHVWISSEQETAGTGVERLTLHLPA
AVTSADAVAQRVELKVPGIHNARNAAAAITAAVLLGVSPTDAAQAVGTFLGAARRFQVHG
TVKQVTVVDDYAHHPTEIAALLDAARRRYPQSTIRVIFQPHLFSRTKFFAREFAEALAKA
DDVIVTGIFPAREKQEDFPEITAATIVDAAAGIKDAAAGEWIQPVEDMGLAARMMAMRAH
HGDVIFTVGAGDITDMDQVLLTALEAHRESCE

MD5 = 30493641f607753e3e81de01d1c584a8


  DNA Sequence

>fig|1074482.3.peg.337 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
ttgtcccagaatcagcccattgtgcttgaccctacccatgcttcgttcgatgccgcggcc
cgtcccgcagatcttggccctacgcatttcatcggtatcgggggtgccggtatgagcgtc
ctggccgagatgctgaacgccgagggcgtgccggtggacggctccgaccgtgagcgcagt
gcaaaaaccgatcgactggaatcattgggtatcaccgttgaattcgggcaacgggcggaa
aatgtggcttcggcttcgaccgttgtctattccagtgccatcaagcccagcaatccggaa
atcgttgccgcgaacgaggctggcctgcacgtcgtgcatcgcagcgatattctcgcttta
ctgatgaacggcaagcgagccgtgaccgtggccggtgcgcacggcaaaaccactaccagt
tccatgcttgcgcacattttggtgcataccggagctgatcccagctatgccatcggcggt
tccatccaagggccggacggtaccaccttggacggtggccatgccggtcaaggtgacgtg
ttggtggctgaggccgatgagtccgacggcagcttcgccaaataccaccccaccatcgcc
atcattaccaatgccgaggccgaccatcttgaccattacggcgatgaagcgcattaccgt
gccgcattcgtgaatcatgccggccatgcaaccggccatgtggtgatctgcgctgatgat
ccggacgcgctggccgtgttccaggcgctgcctgccgacatcaaggcccataccgtcgtc
tatggcaccacgcccattgagcagctgcctgatttagggggtgccgcgcatgtgtggatt
tcctctgaacaggagaccgccggcaccggcgttgaacggcttaccttgcaccttcccgcc
gcggtgacctctgcagatgctgtggcccagcgtgtggaactcaaggttcccggcatccat
aatgcgcgtaatgccgccgcggcaatcaccgccgcggtgctgttgggagtctctcccacc
gacgccgcacaggctgtcggtacgttcctgggagctgcacgccgttttcaggtgcacgga
accgttaagcaggtcacggtggtggacgattacgcgcaccaccctacggagatcgcggct
ctgctggatgcagcacggcgccgttatccgcagtcgaccattcgcgtgattttccaacct
catctgttctcccgtaccaagttctttgcgcgcgaattcgccgaggcgctggccaaggcc
gatgatgtcatcgtcaccggcattttccctgcccgtgagaagcaggaggacttcccggag
attaccgcggccaccatcgtggatgctgctgccggcatcaaggatgcggctgccggcgag
tggattcaaccggttgaagacatgggtcttgccgccaggatgatggccatgcgagcccac
catggggatgtgatctttaccgtgggcgccggcgacatcactgatatggatcaggtgctg
cttaccgcgctcgaggcccatcgcgaaagttgtgagtaa


  DNA with Flanking Sequence

>fig|1074482.3.peg.337 UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)
ttactggaatcggccccgattcggcaggtcaaggcgattatcacgtggctgaatatctgg
agcggattgacttggcctttgcctgcgccgatctggtgatatgccgtgctggagccggtt
cggtatcggagctggcggcgctgggattgccggccatttatgtgcctctgcccattggca
atggcgaacagcgctttaatgcggagccggtggtgaacgctggtggcggtctgctggtag
cggataaggatctgacgccggcatgggtgcatgatcatgtgccgggcatgcttgccgacc
acgaaatgctcgccgagctcggacgcaaagcatgggaatacggcatacgtgatgccgcgc
gcatcatggcgcgccgtgtcctgcagcttgctcaataggaaccggtaaattcacgtttga
tcagaatcggccatacctcgttgcgttggcacggggtacagccataatagaggtgctgga
aatccctcaaggagcgtcaattgtcccagaatcagcccattgtgcttgaccctacccatg
cttcgttcgatgccgcggcccgtcccgcagatcttggccctacgcatttcatcggtatcg
ggggtgccggtatgagcgtcctggccgagatgctgaacgccgagggcgtgccggtggacg
gctccgaccgtgagcgcagtgcaaaaaccgatcgactggaatcattgggtatcaccgttg
aattcgggcaacgggcggaaaatgtggcttcggcttcgaccgttgtctattccagtgcca
tcaagcccagcaatccggaaatcgttgccgcgaacgaggctggcctgcacgtcgtgcatc
gcagcgatattctcgctttactgatgaacggcaagcgagccgtgaccgtggccggtgcgc
acggcaaaaccactaccagttccatgcttgcgcacattttggtgcataccggagctgatc
ccagctatgccatcggcggttccatccaagggccggacggtaccaccttggacggtggcc
atgccggtcaaggtgacgtgttggtggctgaggccgatgagtccgacggcagcttcgcca
aataccaccccaccatcgccatcattaccaatgccgaggccgaccatcttgaccattacg
gcgatgaagcgcattaccgtgccgcattcgtgaatcatgccggccatgcaaccggccatg
tggtgatctgcgctgatgatccggacgcgctggccgtgttccaggcgctgcctgccgaca
tcaaggcccataccgtcgtctatggcaccacgcccattgagcagctgcctgatttagggg
gtgccgcgcatgtgtggatttcctctgaacaggagaccgccggcaccggcgttgaacggc
ttaccttgcaccttcccgccgcggtgacctctgcagatgctgtggcccagcgtgtggaac
tcaaggttcccggcatccataatgcgcgtaatgccgccgcggcaatcaccgccgcggtgc
tgttgggagtctctcccaccgacgccgcacaggctgtcggtacgttcctgggagctgcac
gccgttttcaggtgcacggaaccgttaagcaggtcacggtggtggacgattacgcgcacc
accctacggagatcgcggctctgctggatgcagcacggcgccgttatccgcagtcgacca
ttcgcgtgattttccaacctcatctgttctcccgtaccaagttctttgcgcgcgaattcg
ccgaggcgctggccaaggccgatgatgtcatcgtcaccggcattttccctgcccgtgaga
agcaggaggacttcccggagattaccgcggccaccatcgtggatgctgctgccggcatca
aggatgcggctgccggcgagtggattcaaccggttgaagacatgggtcttgccgccagga
tgatggccatgcgagcccaccatggggatgtgatctttaccgtgggcgccggcgacatca
ctgatatggatcaggtgctgcttaccgcgctcgaggcccatcgcgaaagttgtgagtaat
ggcaggtcgtaccgtcagttctggcggcgcgaaaggagagcgtcgcaaaccccgttcggt
ggaatcgcaccagcgaggtccgggcaaggctggaaagtcgcgtaaagcccgttccgtggc
ctcccgtccgggaaccgtggacgagtctcggcctcaggaagtgacgcgtgccatcgggca
ggaaggtgcgtttgtagacgcgcgcgagctgcatagtgaggattatgttgctgagacgct
gcatcagaccaccggtacgctgggagtgatttcccgtccgaaagtggtggatttcaccga
acgagccaaggagcgcaagcgtgcgggcatgcgcgtcatcgcgctgcgagtggtagccat
ggtaaccagtgtggcggtgctgattgggctggtatggttgctgttcttctcttcggtgtt
ccgcctggaagtgggtgcgatcagcgtatctggagccaacgaatgggtcagtgagcagac
cattcgctccattgccgat


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function
12 fig|1074482.3.peg.333 Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)
12 fig|1074482.3.peg.334 UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
16 fig|1074482.3.peg.335 Peptidoglycan glycosyltransferase FtsW (EC 2.4.1.129)
13 fig|1074482.3.peg.336 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)
17 fig|1074482.3.peg.338 Cell division protein FtsQ homolog


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search