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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 6.8e-274 | 7 | fig|411468.9.peg.944 | Clostridium scindens ATCC 35704 | DNA primase, phage associated | InterPro:IPR007936, InterPro:IPR013838, gb|EDS08677.1, gi|167664547, gi|167757893, gnl|md5|e2ce20a6db676941e24ec265, img|642192464, locus|CLOSCI_00224, protein_id|ZP_02430020.1, ref|ZP_02430020.1, tr|B0N9W2 |
| 4.0e-243 | 7 | fig|699035.5.peg.373 | Clostridium difficile M120 | DNA primase, phage associated | |
| 4.2e-224 | 7 | fig|509191.4.peg.1032 | Acetivibrio cellulolyticus CD2 | DNA primase, phage associated | InterPro:IPR007936, gi|303239097, locus|AceceDRAFT_0975, protein_id|ZP_07325627.1 |
| 8.8e-214 | 7 | fig|742740.3.peg.1135 | Clostridium symbiosum WAL-14163 | DNA primase, phage associated | |
| 8.4e-201 | 7 | fig|1538.8.peg.319 | Clostridium ljungdahlii | Phage primase / Phage helicase | geneID|9443959, gi|300853542, locus|CLJU_c03420, protein_id|YP_003778526.1 |
| 9.2e-122 | 7 | fig|411470.6.peg.2045 | Ruminococcus gnavus ATCC 29149 | DNA primase, phage associated | InterPro:IPR007936, gi|154504837, gnl|md5|79298aa31e0e2652e833fc92, locus|RUMGNA_02347, protein_id|ZP_02041575.1 |
| 4.1e-277 | 6 | fig|879310.3.peg.1787 | Selenomonas sp. oral taxon 137 str. F0430 | DNA primase, phage associated | gi|313896424, locus|HMPREF9162_0068, protein_id|ZP_07829975.1 |
| 5.6e-244 | 6 | fig|573062.4.peg.1737 | Thermoanaerobacter sp. X513 | Phage primase / Phage helicase | InterPro:IPR007936, geneID|9761455, gi|307724794, locus|Thet_1672, protein_id|YP_003904545.1 |
| 1.5e-156 | 6 | fig|573061.4.peg.104 | Clostridium cellulovorans 743B | DNA primase, phage associated | CDD:114021, gi|307686613, locus|Ccel74_010100000576, protein_id|ZP_07629059.1 |
| 1.5e-156 | 6 | fig|573061.5.peg.777 | Clostridium cellulovorans 743B | DNA primase, phage associated | InterPro:IPR007936, geneID|9607608, gi|302873663, locus|Clocel_0762, protein_id|YP_003842296.1 |
| 6.2e-134 | 6 | fig|498761.3.peg.2609 | Heliobacterium modesticaldum Ice1 | Phage primase | geneID|5911523, gi|167630962, gnl|md5|2c5f9c7291f56295ffbe05db, locus|HM1_2941, protein_id|YP_001681461.1 |
| 1.9e-122 | 6 | fig|411460.6.peg.665 | Ruminococcus torques ATCC 27756 | DNA primase, phage associated | gnl|md5|94ae972bd0acc557173e6f39 |
| 4.4e-273 | 5 | fig|439292.4.peg.1662 | Bacillus selenitireducens MLS10 | DNA primase, phage associated | gb|EDP83141.1, gi|160356491, gi|163763223, gnl|md5|b826f8eb541c69678aaf499a, img|641451057, locus|BselDRAFT_2074, protein_id|ZP_02170286.1, ref|ZP_02170286.1, tr|A8VVE8 |
| 2.2e-264 | 5 | fig|439292.5.peg.832 | Bacillus selenitireducens MLS10 | Phage primase / Phage helicase | InterPro:IPR007936, geneID|9263325, gi|297583088, gnl|md5|7cfbb2ae3f0164cca367efab, locus|Bsel_0773, protein_id|YP_003698868.1 |
| 5.6e-244 | 5 | fig|399726.7.peg.1290 | Thermoanaerobacter sp. X514 | Phage primase / Phage helicase | InterPro:IPR007936, gb|ABY92531.1, gb|EES34451.1, gb|EEU11206.1, geneID|5877886, gi|166854122, gi|167039882, gi|242232133, gi|242256303, gi|256383032, gi|256400546, gnl|md5|0aa818e9b7144f14bf77833f, img|641541587, kegg|tex:Teth514_1237, locus|Teth514_1237, protein_id|YP_001662867.1, ref|YP_001662867.1, ref|ZP_04801196.1, ref|ZP_05468098.1, tr|B0K6Q5, tr|C5RS37 |
| 5.6e-244 | 5 | fig|573062.3.peg.332 | Thermoanaerobacter sp. X513 | Phage primase / Phage helicase | InterPro:IPR007936, gb|ABY92531.1, gb|EES34451.1, gb|EEU11206.1, gi|166854122, gi|167039882, gi|242232133, gi|242256303, gi|256383032, gi|256400546, gnl|md5|0aa818e9b7144f14bf77833f, img|641541587, kegg|tex:Teth514_1237, locus|ThetDRAFT_0329, protein_id|ZP_04801196.1, ref|YP_001662867.1, ref|ZP_04801196.1, ref|ZP_05468098.1, tr|B0K6Q5, tr|C5RS37 |
| 5.6e-244 | 5 | fig|588857.3.peg.601 | Thermoanaerobacter sp. X561 | Phage primase / Phage helicase | InterPro:IPR007936, gb|ABY92531.1, gb|EES34451.1, gb|EEU11206.1, gi|166854122, gi|167039882, gi|242232133, gi|242256303, gi|256383032, gi|256400546, gnl|md5|0aa818e9b7144f14bf77833f, img|641541587, kegg|tex:Teth514_1237, locus|Teth561DRAFT_0597, protein_id|ZP_05468098.1, ref|YP_001662867.1, ref|ZP_04801196.1, ref|ZP_05468098.1, tr|B0K6Q5, tr|C5RS37 |
| 2.6e-226 | 5 | fig|864563.3.peg.1258 | Selenomonas sp. oral taxon 149 str. 67H29BP | DNA primase, phage associated | |
| 1.2e-214 | 5 | fig|431943.8.peg.2763 | Clostridium kluyveri DSM 555 | Phage primase | dbj|BAH07407.1, gb|EDK34670.1, geneID|5394367, gi|146348134, gi|153955276, gi|219569423, gi|219855699, gnl|md5|668bcfa11ec7c623b6ffd2a9, img|640859897, kegg|ckl:CKL_2658, kegg|ckr:CKR_2356, locus|CKL_2658, protein_id|YP_001396041.1, ref|YP_001396041.1, ref|YP_002472821.1, tr|A5N0M4, tr|B9E4I2 |
| 1.2e-214 | 5 | fig|583346.6.peg.2657 | Clostridium kluyveri NBRC 12016 | Phage primase | dbj|BAH07407.1, gb|EDK34670.1, geneID|7273503, gi|146348134, gi|153955276, gi|219569423, gi|219855699, gnl|md5|668bcfa11ec7c623b6ffd2a9, img|640859897, kegg|ckl:CKL_2658, kegg|ckr:CKR_2356, locus|CKR_2356, protein_id|YP_002472821.1, ref|YP_001396041.1, ref|YP_002472821.1, tr|A5N0M4, tr|B9E4I2 |
| 7.4e-212 | 5 | fig|222523.6.peg.367 | Bacillus cereus ATCC 10987 | DNA primase, phage associated # P4-type | cmr|BCE_0384, gb|AAS39320.1, geneID|2748477, gi|42735381, gi|42779465, gnl|md5|08941adc8dc21dfe7ba27a64, img|637277173, kegg|bca:BCE_0384, locus|BCE_0384, pathema|gbc.1755.cds.ORFB00121, protein_id|NP_976712.1, ref|NP_976712.1, tr|Q73EH4 |
| 9.6e-212 | 5 | fig|394503.6.peg.2926 | Clostridium cellulolyticum H10 | Phage primase | InterPro:IPR002129, InterPro:IPR007936, gb|ACL77144.1, geneID|7311469, gi|220000543, gi|220930215, gnl|md5|8d71e838bf4b0186a769bd75, kegg|cce:Ccel_2850, locus|Ccel_2850, protein_id|YP_002507124.1, ref|YP_002507124.1, tr|B8I844 |
| 1.5e-156 | 5 | fig|573061.3.peg.2339 | Clostridium cellulovorans 743B | DNA primase, phage associated | InterPro:IPR007936, gi|242261035, gnl|md5|6e05869f2a2b46bb70f9af51, locus|ClocelDRAFT_2315, protein_id|ZP_04805746.1 |
| 1.0e-144 | 5 | fig|243164.3.peg.958 | Dehalococcoides ethenogenes 195 | Phage primase | GeneID:3229606, LocusTag:DET1098, YP_181813.1, cmr|DET_1098, gb|AAW39645.1, gi|57224588, gi|57234140, gnl|md5|c0a688131aa635df1840e71a, img|637120662, kegg|det:DET1098, ref|YP_181813.1, tr|Q3Z7I6 |
| 6.2e-134 | 5 | fig|498761.4.peg.2616 | Heliobacterium modesticaldum Ice1 | Phage primase | geneID|5911523, gi|167630962, gnl|md5|2c5f9c7291f56295ffbe05db, locus|HM1_2941, protein_id|YP_001681461.1 |
| 4.0e-125 | 5 | fig|592031.3.peg.62 | Eubacterium saphenum ATCC 49989 | Phage primase | gb|EEU03766.1, gi|255993677, gi|255994009, gnl|md5|9e6ce040bd29b2deeb8155ea, ref|ZP_05427144.1 |
| 5.6e-244 | 4 | fig|399726.4.peg.1207 | Thermoanaerobacter sp. X514 | Phage primase / Phage helicase | ABY92531.1, InterPro:IPR007936, Teth514_1237, gb|ABY92531.1, gb|EES34451.1, gb|EEU11206.1, gi|166854122, gi|167039882, gi|242232133, gi|242256303, gi|256383032, gi|256400546, gnl|md5|0aa818e9b7144f14bf77833f, img|641541587, kegg|tex:Teth514_1237, ref|YP_001662867.1, ref|ZP_04801196.1, ref|ZP_05468098.1, tr|B0K6Q5, tr|C5RS37 |
| 9.6e-212 | 4 | fig|394503.7.peg.2934 | Clostridium cellulolyticum H10 | Phage primase | InterPro:IPR002129, InterPro:IPR007936, gb|ACL77144.1, geneID|7311469, gi|220000543, gi|220930215, gnl|md5|8d71e838bf4b0186a769bd75, kegg|cce:Ccel_2850, locus|Ccel_2850, protein_id|YP_002507124.1, ref|YP_002507124.1, tr|B8I844 |
| 1.0e-144 | 4 | fig|243164.10.peg.1033 | Dehalococcoides ethenogenes 195 | Phage primase | cmr|DET_1098, gb|AAW39645.1, geneID|3229606, gi|57224588, gi|57234140, gnl|md5|c0a688131aa635df1840e71a, img|637120662, kegg|det:DET1098, locus|DET1098, protein_id|YP_181813.1, ref|YP_181813.1, tr|Q3Z7I6 |
| 5.4e-130 | 4 | fig|411902.9.peg.2279 | Clostridium bolteae ATCC BAA-613 | DNA primase, phage associated | InterPro:IPR007936, gb|EDP17051.1, gi|158439299, gi|160937654, gnl|md5|1d4fe7eddaa8223bc4a39968, img|641402685, locus|CLOBOL_02544, protein_id|ZP_02085014.1, ref|ZP_02085014.1, tr|A8RPR6 |
| 5.4e-114 | 4 | fig|349161.4.peg.1178 | Desulfotomaculum reducens MI-1 | Phage primase / Phage helicase | ABO49730.1, Dred_1196, InterPro:IPR007936, gb|ABO49730.1, gi|134051759, gi|134299059, gnl|md5|568c0cfc4396853b557288a5, img|640180366, kegg|drm:Dred_1196, ref|YP_001112555.1, tr|A4J3S7 |
| 5.4e-114 | 4 | fig|349161.6.peg.1324 | Desulfotomaculum reducens MI-1 | Phage primase / Phage helicase | InterPro:IPR007936, gb|ABO49730.1, geneID|4958179, gi|134051759, gi|134299059, gnl|md5|568c0cfc4396853b557288a5, img|640180366, kegg|drm:Dred_1196, locus|Dred_1196, protein_id|YP_001112555.1, ref|YP_001112555.1, tr|A4J3S7 |
| 1.0e-282 | 3 | fig|293826.4.peg.3882 | Alkaliphilus metalliredigens QYMF | Phage primase | ABR50131.1, Amet_4049, InterPro:IPR007936, gb|ABR50131.1, gi|149951603, gi|150391741, gnl|md5|bc55b45ec48794b8bc955614, img|638739843, img|640784845, kegg|amt:Amet_4049, ref|YP_001321790.1, tr|A6TVB3 |
| 1.0e-282 | 3 | fig|293826.6.peg.4168 | Alkaliphilus metalliredigens QYMF | Phage primase | InterPro:IPR007936, gb|ABR50131.1, geneID|5314130, gi|149951603, gi|150391741, gnl|md5|bc55b45ec48794b8bc955614, img|638739843, img|640784845, kegg|amt:Amet_4049, locus|Amet_4049, protein_id|YP_001321790.1, ref|YP_001321790.1, tr|A6TVB3 |
| 1.2e-214 | 3 | fig|431943.4.peg.2707 | Clostridium kluyveri DSM 555 | Phage primase | CKL_2658, GeneID:5394367, YP_001396041.1, dbj|BAH07407.1, gb|EDK34670.1, gi|146348134, gi|153955276, gi|219569423, gi|219855699, gnl|md5|668bcfa11ec7c623b6ffd2a9, img|640859897, kegg|ckl:CKL_2658, kegg|ckr:CKR_2356, ref|YP_001396041.1, ref|YP_002472821.1, tr|A5N0M4, tr|B9E4I2 |
| 7.4e-212 | 3 | fig|222523.1.peg.384 | Bacillus cereus ATCC 10987 | DNA primase, phage associated # P4-type | BCE0384, GeneID:2748477, NP_976712.1, cmr|BCE_0384, gb|AAS39320.1, gi|42735381, gi|42779465, gnl|md5|08941adc8dc21dfe7ba27a64, img|637277173, kegg|bca:BCE_0384, pathema|gbc.1755.cds.ORFB00121, ref|NP_976712.1, tr|Q73EH4 |