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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on aspen.cels.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 4e-128 | 8 | fig|267608.8.peg.1736 | Ralstonia solanacearum GMI1000 | Phage tail, tail length tape-measure protein | geneID|1220526, gi|17546409, locus|RSc1690, protein_id|NP_519811.1 |
| 3e-110 | 8 | fig|205918.4.peg.3082 | Pseudomonas syringae pv. syringae B728a | Phage tail length tape-measure protein 1 | GeneID:3368298, LocusTag:Psyr_2780, YP_235857.1, gi|66046016 |
| 3e-104 | 8 | fig|994484.3.peg.4045 | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | Phage tail length tape-measure protein 1 | geneID|10472900, gi|330810716, locus|PSEBR_a3807, protein_id|YP_004355178.1 |
| 0.0 | 7 | fig|211586.12.peg.2851 | Shewanella oneidensis MR-1 | Phage tail, tail length tape-measure protein | geneID|1170641, gene_name|H, gi|24374479, locus|SO_2953, protein_id|NP_718522.1 |
| 0.0 | 7 | fig|345075.15.peg.455 | Vibrio cholerae V51 | Phage tail length tape-measure protein 1 | |
| 4e-128 | 7 | fig|267608.1.peg.1690 | Ralstonia solanacearum GMI1000 | Phage tail, tail length tape-measure protein | GeneID:1220526, NP_519811.1, RS04086, RSc1690, gi|17546409 |
| 5.6e-128 | 7 | fig|405955.13.peg.1503 | Escherichia coli APEC O1 | Phage tail, tail length tape-measure protein | geneID|4493740, gene_name|ynaA, gi|117623632, locus|APECO1_532, protein_id|YP_852545.1 |
| 3e-110 | 7 | fig|205918.7.peg.2837 | Pseudomonas syringae pv. syringae B728a | Phage tail length tape-measure protein 1 | InterPro:IPR001563, InterPro:IPR006431, InterPro:IPR009628, geneID|3368298, gi|66046016, locus|Psyr_2780, protein_id|YP_235857.1 |
| 0 | 6 | fig|351745.9.peg.2585 | Shewanella sp. W3-18-1 | Phage tail length tape-measure protein 1 | InterPro:IPR006431, InterPro:IPR009628, geneID|4659657, gi|120599274, locus|Sputw3181_2470, protein_id|YP_963848.1 |
| 8.6e-129 | 6 | fig|340185.4.peg.1048 | Escherichia coli E22 | Phage tail length tape-measure protein 1 | gi|193062737, locus|EcE22_4872, protein_id|ZP_03043831.1 |
| 1.1e-125 | 6 | fig|859656.5.peg.2166 | Ralstonia solanacearum CFBP2957 | Phage tail length tape-measure protein 1 | |
| 1e-120 | 6 | fig|947561.3.peg.1475 | Yersinia enterocolitica IP2222 | Phage tail length tape-measure protein 1 | |
| 0.0 | 5 | fig|211586.1.peg.2679 | Shewanella oneidensis MR-1 | Phage tail, tail length tape-measure protein | GeneID:1170641, H, NP_718522.1, SO2953, gi|24374479 |
| 6.5e-123 | 5 | fig|557598.3.peg.1614 | Laribacter hongkongensis HLHK9 | Phage tail, tail length tape-measure protein | geneID|7757374, gi|226940680, locus|LHK_01761, protein_id|YP_002795754.1 |
| 0.0 | 4 | fig|211586.9.peg.2647 | Shewanella oneidensis MR-1 | Phage tail, tail length tape-measure protein | H, SO_2953 |
| 1.4e-148 | 4 | fig|550687.3.peg.1202 | Escherichia coli E482 | Phage tail length tape-measure protein 1 | gi|323942339, locus|ERDG_01163, protein_id|EGB38510.1 |
| 1e-147 | 4 | fig|754333.3.peg.4211 | Escherichia albertii TW11588 | Phage tail length tape-measure protein 1 | |
| 4.3e-145 | 4 | fig|869669.3.peg.3503 | Escherichia coli 1.2741 | Phage tail length tape-measure protein 1 | |
| 5.6e-128 | 4 | fig|216592.1.peg.1901 | Escherichia coli 042 | Phage tail, tail length tape-measure protein | |
| 5.6e-128 | 4 | fig|216592.3.peg.1561 | Escherichia coli 042 | Phage tail, tail length tape-measure protein | gi|284921265, locus|EC042_1507, protein_id|CBG34331.1 |
| 5.6e-128 | 4 | fig|405955.9.peg.1232 | Escherichia coli APEC O1 | Phage tail, tail length tape-measure protein | APECO1_532, GeneID:4493740, YP_852545.1, gi|117623632, ynaA |
| 3e-121 | 4 | fig|743273.3.peg.2832 | Bordetella pertussis B0558 | Phage tail, tail length tape-measure protein | |
| 3e-121 | 4 | fig|743274.3.peg.2949 | Bordetella pertussis B1193 | Phage tail, tail length tape-measure protein | |
| 3e-121 | 4 | fig|743276.3.peg.1783 | Bordetella pertussis B1834 | Phage tail, tail length tape-measure protein | |
| 1.4e-145 | 3 | fig|316401.4.peg.962 | Escherichia coli ETEC H10407 | Phage tail length tape-measure protein 1 | gi|309701040, locus|ETEC_0828, protein_id|CBJ00338.1 |
| 3e-144 | 3 | fig|754331.3.peg.4379 | Escherichia sp. TW09308 | Phage tail length tape-measure protein 1 | |
| 1.9e-130 | 3 | fig|762376.5.peg.4024 | Achromobacter xylosoxidans A8 | Phage tail length tape-measure protein 1 | geneID|9898348, gi|311107198, locus|AXYL_04016, protein_id|YP_003980051.1 |
| 3e-121 | 3 | fig|1017264.3.peg.3575 | Bordetella pertussis CS | Phage tail, tail length tape-measure protein | gi|332383667, locus|BPTD_3321, protein_id|AEE68514.1 |
| 3e-121 | 3 | fig|257313.1.peg.2968 | Bordetella pertussis Tohama I | Phage tail, tail length tape-measure protein | BP3366, GeneID:2666302, NP_881898.1, gi|33594254 |
| 3e-121 | 3 | fig|257313.5.peg.3646 | Bordetella pertussis Tohama I | Phage tail, tail length tape-measure protein | geneID|2666302, gi|33594254, locus|BP3366, protein_id|NP_881898.1 |
| 5e-114 | 3 | fig|257310.1.peg.2221 | Bordetella bronchiseptica RB50 | Phage tail, tail length tape-measure protein | BB2230, GeneID:2659245, NP_888774.1, gi|33601214 |
| 5e-114 | 3 | fig|257310.5.peg.3563 | Bordetella bronchiseptica RB50 | Phage tail, tail length tape-measure protein | geneID|2660952, gi|33602464, locus|BB3490, protein_id|NP_890024.1 |
| 3.4e-147 | 2 | fig|749531.3.peg.4303 | Escherichia coli MS 69-1 | Phage tail length tape-measure protein 1 | |
| 3.4e-147 | 2 | fig|752784.3.peg.2138 | Escherichia coli KD2 | Phage tail length tape-measure protein 1 | gi|388390606, locus|ECKD2_11140, protein_id|EIL52084.1 |
| 7.7e-147 | 2 | fig|656419.3.peg.1761 | Escherichia coli M718 | Phage tail length tape-measure protein 1 | CDD:34878, gi|307220942, locus|EcolM_010100008194, protein_id|ZP_07507366.1 |
| 4.3e-145 | 2 | fig|869669.4.peg.798 | Escherichia coli 1.2741 | Phage tail length tape-measure protein 1 | gi|386142258, locus|EC12741_5027, protein_id|EIG83396.1 |
| 9.0e-145 | 2 | fig|679206.4.peg.4984 | Escherichia coli MS 119-7 | Phage tail length tape-measure protein 1 | InterPro:IPR006431, InterPro:IPR009628, InterPro:IPR019125, gi|300825293, locus|HMPREF9346_05150, protein_id|ZP_07105376.1 |
| 7.8e-137 | 2 | fig|656444.3.peg.2145 | Escherichia coli TA280 | Phage tail length tape-measure protein 1 | |
| 2.0e-105 | 2 | fig|427082.3.peg.1910 | Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 | Phage tail length tape-measure protein 1 | gi|294665714, locus|XAUC_17290, protein_id|ZP_06730988.1 |