The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki]
[RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ]

SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov		 The SEED

FIG search
PEGs that Might Be in Clusters
Sim. Sc. Cluster Size PEG Genome Function Aliases
2.0e-302 6 fig|345075.15.peg.462 Vibrio cholerae V51 Phage tail fiber protein
4.1e-295 6 fig|390235.3.peg.3901 Pseudomonas putida W619 Phage tail fiber protein #Phage host specificity protein J ACA74407.1, InterPro:IPR015406, PputW619_3927, gi|169761091
4.1e-295 6 fig|390235.5.peg.3949 Pseudomonas putida W619 Phage tail fiber protein #Phage host specificity protein J InterPro:IPR015406, geneID|6112891, gi|170723088, locus|PputW619_3927, protein_id|YP_001750776.1
2.9e-291 6 fig|673266.4.peg.1886 Pseudomonas syringae pv. syringae 642 Phage tail fiber protein CDD:34348, gi|302186576, locus|Psyrps6_010100009523, protein_id|ZP_07263249.1
0.0 6 fig|768490.3.peg.3402 Serratia sp. AS12 Phage tail fiber protein InterPro:IPR015406, geneID|10627549, gi|333928242, locus|SerAS12_3403, protein_id|YP_004501821.1
0.0 6 fig|768492.3.peg.3395 Serratia sp. AS9 Phage tail fiber protein InterPro:IPR015406, geneID|10622537, gi|333933195, locus|SerAS9_3402, protein_id|YP_004506773.1
0.0 6 fig|768493.3.peg.3393 Serratia sp. AS13 Phage tail fiber protein InterPro:IPR015406, gi|333962399, locus|SerAS13_3405, protein_id|AEG29172.1
8.2e-288 6 fig|350703.9.peg.513 Pseudomonas aeruginosa 2192 Phage tail fiber protein #Phage host specificity protein J
1.7e-286 6 fig|746360.3.peg.4214 Pseudomonas fluorescens WH6 Phage tail fiber protein
1.7e-285 6 fig|216595.1.peg.6736 Pseudomonas fluorescens SBW25 Phage tail fiber protein #Phage host specificity protein J
1.5e-284 6 fig|205918.4.peg.3074 Pseudomonas syringae pv. syringae B728a Phage tail fiber protein #Phage host specificity protein J GeneID:3368290, LocusTag:Psyr_2772, YP_235849.1, gi|66046008
0.0 5 fig|994484.3.peg.4038 Pseudomonas brassicacearum subsp. brassicacearum NFM421 Phage tail fiber protein geneID|10472893, gi|330810709, locus|PSEBR_a3799, protein_id|YP_004355171.1
1.7e-285 5 fig|216595.4.peg.3075 Pseudomonas fluorescens SBW25 Phage tail fiber protein #Phage host specificity protein J geneID|7818249, gi|229590352, locus|PFLU2892, protein_id|YP_002872471.1
1.5e-284 5 fig|205918.7.peg.2832 Pseudomonas syringae pv. syringae B728a Phage tail fiber protein #Phage host specificity protein J InterPro:IPR000276, InterPro:IPR003961, geneID|3368290, gi|66046008, locus|Psyr_2772, protein_id|YP_235849.1
0 4 fig|351745.9.peg.2571 Shewanella sp. W3-18-1 Phage tail fiber protein #Phage host specificity protein J InterPro:IPR000276, InterPro:IPR003610, InterPro:IPR003961, geneID|4659013, gi|120599260, locus|Sputw3181_2456, protein_id|YP_963834.1
3.8e-294 4 fig|673198.4.peg.1073 Pseudomonas syringae pv. tomato Max13 Phage tail fiber protein CDD:34348, gi|301382061, locus|PsyrptM_010100005493, protein_id|ZP_07230479.1
9.3e-291 4 fig|682634.3.peg.4178 Serratia odorifera 4Rx13 Phage tail fiber protein gi|270264779, locus|SOD_i01960, protein_id|ZP_06193044.1
8.2e-288 4 fig|350703.3.peg.3114 Pseudomonas aeruginosa 2192 Phage tail fiber protein #Phage host specificity protein J LocusTag:Paer2_01001065, ZP_00975650.1, cds.3114, gi|84327633
0.000000 3 fig|211586.12.peg.2838 Shewanella oneidensis MR-1 Phage tail tip, host specificity protein J geneID|1170628, gi|24374466, locus|SO_2940, protein_id|NP_718509.1
0.000000 3 fig|211586.9.peg.2634 Shewanella oneidensis MR-1 Phage tail tip, host specificity protein J J, SO_2940
0.000000 2 fig|211586.1.peg.2666 Shewanella oneidensis MR-1 Phage tail tip, host specificity protein J GeneID:1170628, NP_718509.1, SO2940, gi|24374466
0.0 2 fig|983918.3.peg.5549 Pseudomonas aeruginosa 138244 Phage tail fiber protein gi|334834212, locus|PA13_28357, protein_id|EGM13197.1
3.0e-282 2 fig|1035377.4.peg.3136 Yersinia pestis A1122 Phage tail fiber protein gi|342855166, locus|A1122_15480, protein_id|AEL73719.1
3.0e-282 2 fig|1084226.3.peg.2634 Yersinia pestis biovar Orientalis str. BA200901799 Phage tail fiber protein
3.0e-282 2 fig|1084227.3.peg.3789 Yersinia pestis biovar Orientalis str. AS200901539 Phage tail fiber protein
3.0e-282 2 fig|1084228.3.peg.2624 Yersinia pestis biovar Orientalis str. AS200901156 Phage tail fiber protein
3.0e-282 2 fig|1084229.3.peg.643 Yersinia pestis biovar Orientalis str. BA200901703 Phage tail fiber protein
3.0e-282 2 fig|1084230.3.peg.1206 Yersinia pestis biovar Orientalis str. BA200901990 Phage tail fiber protein
3.0e-282 2 fig|1084231.3.peg.1607 Yersinia pestis biovar Orientalis str. BA200902009 Phage tail fiber protein
3.0e-282 2 fig|1084233.3.peg.140 Yersinia pestis biovar Orientalis str. AS200901434 Phage tail fiber protein
3.0e-282 2 fig|1084234.3.peg.1413 Yersinia pestis biovar Orientalis str. AS200901509 Phage tail fiber protein
3.0e-282 2 fig|187410.1.peg.2150 Yersinia pestis KIM Phage tail fiber protein #Phage host specificity protein J GeneID:1147135, NP_669498.1, gi|22126075, y2188
3.0e-282 2 fig|187410.11.peg.2376 Yersinia pestis KIM 10 Phage tail fiber protein #Phage host specificity protein J geneID|1147135, gi|22126075, locus|y2188, protein_id|NP_669498.1
3.0e-282 2 fig|214092.1.peg.2195 Yersinia pestis CO92 Phage tail fiber protein #Phage host specificity protein J GeneID:1174968, NP_405679.1, YPO2131, gi|16122366
3.0e-282 2 fig|214092.10.peg.2649 Yersinia pestis CO92 Phage tail fiber protein #Phage host specificity protein J InterPro:IPR003961, InterPro:IPR008957, UniProtKB/TrEMBL:Q7CIG0, geneID|1174968, gi|218929234, locus|YPO2131, protein_id|YP_002347109.1
3.0e-282 2 fig|349746.9.peg.2847 Yersinia pestis Angola Phage tail fiber protein #Phage host specificity protein J geneID|5800844, gi|162421384, locus|YpAngola_A2374, protein_id|YP_001606800.1
3.0e-282 2 fig|360099.5.peg.1479 Yersinia pestis biovar Antiqua str. E1979001 Phage tail fiber protein #Phage host specificity protein J gi|166009235, locus|YpE1979001_0508, protein_id|ZP_02230133.1
3.0e-282 2 fig|360102.10.peg.1954 Yersinia pestis Antiqua Phage tail fiber protein #Phage host specificity protein J InterPro:IPR003961, geneID|4119812, gi|108807486, locus|YPA_1490, protein_id|YP_651402.1
3.0e-282 2 fig|360102.4.peg.1886 Yersinia pestis Antiqua Phage tail fiber protein #Phage host specificity protein J GeneID:4119812, InterPro:IPR003961, YPA_1490, YP_651402.1, gi|108807486
3.0e-282 2 fig|373665.6.peg.4234 Yersinia pestis biovar Orientalis str. IP275 Phage tail fiber protein #Phage host specificity protein J gi|165939400, locus|YPIP275_1720, protein_id|ZP_02227948.1
3.0e-282 2 fig|375450.5.peg.678 Yersinia pestis FV-1 Phage tail fiber protein #Phage host specificity protein J CDD:34348, gi|167466959, locus|YpesF_010100003475, protein_id|ZP_02331663.1
3.0e-282 2 fig|377628.10.peg.1963 Yersinia pestis Nepal516 Phage tail fiber protein #Phage host specificity protein J InterPro:IPR003961, geneID|4124951, gi|108811763, locus|YPN_1600, protein_id|YP_647530.1
3.0e-282 2 fig|377628.11.peg.1777 Yersinia pestis Nepal516 [WGS] Phage tail fiber protein #Phage host specificity protein J ASAP:BBD-0001287, ERIC:BBD-0001287, gi|229902056, locus|YP516_1781, protein_id|ZP_04517177.1
3.0e-282 2 fig|377628.5.peg.1911 Yersinia pestis Nepal516 Phage tail fiber protein #Phage host specificity protein J GeneID:4124951, InterPro:IPR003961, YPN_1600, YP_647530.1, gi|108811763
3.0e-282 2 fig|386656.4.peg.1120 Yersinia pestis Pestoides F Phage tail fiber protein #Phage host specificity protein J GeneID:5062031, YPDSF_1000, YP_001162373.1, gi|145598297
3.0e-282 2 fig|386656.9.peg.1438 Yersinia pestis Pestoides F Phage tail fiber protein #Phage host specificity protein J geneID|5062031, gi|145598297, locus|YPDSF_1000, protein_id|YP_001162373.1
3.0e-282 2 fig|404214.5.peg.4025 Yersinia pestis biovar Orientalis str. F1991016 Phage tail fiber protein #Phage host specificity protein J gi|165927732, locus|YpF1991016_2734, protein_id|ZP_02223564.1
FIG search