The SEED: an Annotation/Analysis Tool Provided by FIG
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SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov
The SEED

FIG search
PEGs that Might Be in Clusters
Sim. Sc. Cluster Size PEG Genome Function Aliases
2.0e-027 8 fig|639283.3.peg.1085 Starkeya novella DSM 506 Uncharacterized protein YybS geneID|9332142, gi|298291081, gnl|md5|1f6e2de714fcc8e5099ffbe8, locus|Snov_1081, protein_id|YP_003693020.1
1.6e-085 6 fig|666684.3.peg.2019 Afipia sp. 1NLS2 Uncharacterized protein YybS InterPro:IPR018710, gi|299133696, gnl|md5|e92b91eab8748217eeccb59b, locus|AfiDRAFT_2019, protein_id|ZP_07026890.1
2.4e-037 6 fig|582899.5.peg.1160 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein gb|EET67720.1, gi|255274635, gi|255334735, gnl|md5|e9e70141d58c077658372fe4, locus|HdenDRAFT_1112, protein_id|ZP_05375650.1, ref|ZP_05375650.1
2.4e-037 6 fig|582899.7.peg.1770 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein geneID|9387610, gi|300023235, locus|Hden_1718, protein_id|YP_003755846.1
3.7e-084 5 fig|1031710.3.peg.1786 Oligotropha carboxidovorans OM4 Uncharacterized protein YybS gi|336094983, locus|OCA4_c16710, protein_id|AEI02809.1
3.7e-084 5 fig|504832.4.peg.2374 Oligotropha carboxidovorans OM5 Uncharacterized protein YybS cmr|NT02OC2383, gb|ACI93486.1, geneID|6990180, gi|209873690, gi|209885494, gnl|md5|01d140e2346accc1d3aa3a9b, img|642846253, kegg|oca:OCAR_6373, locus|OCAR_6373, protein_id|YP_002289351.1, ref|YP_002289351.1, tr|B6JGW5
3.7e-084 5 fig|504832.5.peg.2244 Oligotropha carboxidovorans OM5 Uncharacterized protein YybS cmr|NT02OC2383, gb|ACI93486.1, geneID|6990180, gi|209873690, gi|209885494, gnl|md5|01d140e2346accc1d3aa3a9b, img|642846253, kegg|oca:OCAR_6373, locus|OCAR_6373, protein_id|YP_002289351.1, ref|YP_002289351.1, tr|B6JGW5
3.7e-084 5 fig|504832.7.peg.1783 Oligotropha carboxidovorans OM5 Uncharacterized protein YybS gi|336098562, locus|OCA5_c16710, protein_id|AEI06385.1
7e-42 5 fig|78245.7.peg.3445 Xanthobacter autotrophicus Py2 hypothetical protein gb|ABS68350.1, geneID|5424947, gi|154161134, gi|154247049, gnl|md5|be1012e2295e09379140f729, img|639082816, img|640882366, kegg|xau:Xaut_3120, locus|Xaut_3120, protein_id|YP_001418007.1, ref|YP_001418007.1, tr|A7IK07
6e-102 4 fig|316056.16.peg.2354 Rhodopseudomonas palustris BisB18 FIG003573: hypothetical protein cmr|NT04RP2426, gb|ABD87848.1, geneID|3973735, gi|90105811, gi|90423797, gnl|md5|bcbd948cee596da09607481d, img|637925402, kegg|rpc:RPC_2294, locus|RPC_2294, protein_id|YP_532167.1, ref|YP_532167.1, tr|Q215T8
3.5e-066 4 fig|316058.11.peg.2588 Rhodopseudomonas palustris HaA2 FIG003573: hypothetical protein geneID|3910251, gi|86749582, gnl|md5|25525fecc5df4cdb0e1ac887, locus|RPB_2462, protein_id|YP_486078.1
2.3e-060 4 fig|652103.3.peg.1384 Rhodopseudomonas palustris DX-1 FIG003573: hypothetical protein gi|283840322, gnl|md5|b562257ea54891a0136b9105, locus|Rpdx1DRAFT_1348, protein_id|ZP_06357869.1
4.2e-042 4 fig|426117.7.peg.2574 Methylobacterium sp. 4-46 FIG003573: hypothetical protein gb|ACA17031.1, geneID|6133523, gi|168195084, gi|170740810, gnl|md5|f8e50aee4969b52cc1e713fe, img|641642806, kegg|met:M446_2592, locus|M446_2592, protein_id|YP_001769465.1, ref|YP_001769465.1, tr|B0UL31
2.1e-031 4 fig|114615.3.peg.3206 Bradyrhizobium sp. ORS278 FIG003573: hypothetical protein emb|CAL77101.1, geneID|5118503, gi|146193090, gi|146340284, gnl|md5|0fd04665bbd739ec7b84a4da, img|640520940, kegg|bra:BRADO3307, locus|BRADO3307, protein_id|YP_001205332.1, ref|YP_001205332.1, tr|A4YT75
1.1e-028 4 fig|395960.3.peg.3532 Rhodopseudomonas palustris TIE-1 FIG003573: hypothetical protein gb|ACF01990.1, geneID|6411163, gi|192285609, gi|192291860, gnl|md5|921c32f7b86ed9fb2b4da210, img|642349253, img|642713368, kegg|rpt:Rpal_3489, locus|Rpal_3489, protein_id|YP_001992465.1, ref|YP_001992465.1, tr|B3Q9T7
3e-27 4 fig|204722.1.peg.438 Brucella suis 1330 FIG003573: hypothetical protein BR0453, GeneID:1166114, NP_697481.1, cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, patric|cds.000944.230277, patric|cds.000958.751692, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
8e-155 3 fig|314253.3.peg.3300 Nitrobacter sp. Nb-311A FIG003573: hypothetical protein gb|EAQ34747.1, gi|85696862, gi|85716346, gnl|md5|1e1e1960cf5ce18df6f34090, img|638922650, ref|ZP_01047319.1, tr|A3WZ45
8e-155 3 fig|314253.5.peg.1342 Nitrobacter sp. Nb-311A FIG003573: hypothetical protein gb|EAQ34747.1, gi|85696862, gi|85716346, gnl|md5|1e1e1960cf5ce18df6f34090, img|638922650, ref|ZP_01047319.1, tr|A3WZ45
2e-148 3 fig|323098.3.peg.1354 Nitrobacter winogradskyi Nb-255 FIG003573: hypothetical protein GeneID:3674547, LocusTag:Nwi_1693, YP_318306.1, gb|ABA04954.1, gi|74420755, gi|75675885, gnl|md5|6797c6505b0eb24c887b47fc, img|637713251, kegg|nwi:Nwi_1693, ref|YP_318306.1, tr|Q3SRY7
3.2e-115 3 fig|224911.5.peg.4090 Bradyrhizobium japonicum USDA 110 FIG003573: hypothetical protein geneID|1048565, gi|27379188, gnl|md5|e3e20f4312a0bda8678a6ae8, locus|bll4077, protein_id|NP_770717.1
8e-105 3 fig|316057.3.peg.3567 Rhodopseudomonas palustris BisB5 FIG003573: hypothetical protein GeneID:4023490, LocusTag:RPD_2987, YP_570114.1, cds.3567, gb|ABE40213.1, gi|91683911, gi|91977455, gnl|md5|2e9011068b70c9b9b02158bf, img|637963186, kegg|rpd:RPD_2987, ref|YP_570114.1, tr|Q135M6
6e-102 3 fig|316056.14.peg.2269 Rhodopseudomonas palustris BisB18 FIG003573: hypothetical protein ABD87848.1, RPC_2294, cmr|NT04RP2426, gb|ABD87848.1, gi|90105811, gi|90423797, gnl|md5|bcbd948cee596da09607481d, img|637925402, kegg|rpc:RPC_2294, ref|YP_532167.1, tr|Q215T8
4e-99 3 fig|316058.9.peg.2455 Rhodopseudomonas palustris HaA2 FIG003573: hypothetical protein ABD07167.1, RPB_2462, cmr|NT03RP2633, gb|ABD07167.1, gi|86572610, gi|86749582, gnl|md5|49dcfa6ee2ef49d340f6ea08, img|637884361, kegg|rpb:RPB_2462, ref|YP_486078.1, tr|Q2IX93
1e-98 3 fig|258594.1.peg.3061 Rhodopseudomonas palustris CGA009 Uncharacterized protein YybS GeneID:2690761, NP_948418.1, RPA3079, cmr|NT02RP3199, emb|CAE28520.1, gi|39649996, gi|39936142, gnl|md5|2022b5d7ae21862f050574a8, img|637476217, kegg|rpa:RPA3079, ref|NP_948418.1, tr|Q6N5A2
1e-98 3 fig|258594.8.peg.3237 Rhodopseudomonas palustris CGA009 Uncharacterized protein YybS cmr|NT02RP3199, emb|CAE28520.1, geneID|2690761, gi|39649996, gi|39936142, gnl|md5|2022b5d7ae21862f050574a8, img|637476217, kegg|rpa:RPA3079, locus|RPA3079, protein_id|NP_948418.1, ref|NP_948418.1, tr|Q6N5A2
2e-97 3 fig|316055.14.peg.3286 Rhodopseudomonas palustris BisA53 FIG003573: hypothetical protein ABJ07247.1, RPE_3314, gb|ABJ07247.1, gi|115519263, gi|115525316, gnl|md5|01f4169ebde6e4e237c6b354, img|639320941, kegg|rpe:RPE_3314, ref|YP_782227.1, tr|Q07LD7
2e-97 3 fig|316055.16.peg.3357 Rhodopseudomonas palustris BisA53 FIG003573: hypothetical protein gb|ABJ07247.1, geneID|4361000, gi|115519263, gi|115525316, gnl|md5|01f4169ebde6e4e237c6b354, img|639320941, kegg|rpe:RPE_3314, locus|RPE_3314, protein_id|YP_782227.1, ref|YP_782227.1, tr|Q07LD7
4e-76 3 fig|288000.5.peg.3813 Bradyrhizobium sp. BTAi1 FIG003573: hypothetical protein BBta_3813, GeneID:5156010, YP_001239796.1, gb|ABQ35890.1, gi|146407384, gi|148255211, gnl|md5|9631a8ef947eaf7d58a250a6, img|640558652, kegg|bbt:BBta_3813, ref|YP_001239796.1, tr|A5EI96
4e-76 3 fig|288000.8.peg.3884 Bradyrhizobium sp. BTAi1 FIG003573: hypothetical protein gb|ABQ35890.1, geneID|5156010, gi|146407384, gi|148255211, gnl|md5|9631a8ef947eaf7d58a250a6, img|640558652, kegg|bbt:BBta_3813, locus|BBta_3813, protein_id|YP_001239796.1, ref|YP_001239796.1, tr|A5EI96
2.3e-060 3 fig|652103.6.peg.2383 Rhodopseudomonas palustris DX-1 FIG003573: hypothetical protein geneID|10064566, gi|316933691, locus|Rpdx1_2349, protein_id|YP_004108673.1
1e-26 3 fig|224914.1.peg.1481 Brucella melitensis 16M Uncharacterized protein YybS BMEI1482, GeneID:1197193, NP_540399.1, cmr|NT01BM1838, gb|AAL52663.1, gi|17983487, gi|17987765, gi|256044169, gnl|md5|54c69fd0cf52efdc705ea4e9, img|637248532, kegg|bme:BMEI1482, patric|cds.003275.80392, ref|NP_540399.1, ref|ZP_05447076.1, tr|Q8YFN8
0 2 fig|323097.3.peg.3090 Nitrobacter hamburgensis X14 FIG003573: hypothetical protein GeneID:4030627, LocusTag:Nham_2414, YP_577664.1, cds.3090, cmr|NT01NH2911, gb|ABE63204.1, gi|91800829, gi|92117935, gnl|md5|2ff3e236d0a607fdec10d5f5, img|637970873, kegg|nha:Nham_2414, ref|YP_577664.1, tr|Q1QKP3
1e-115 2 fig|224911.1.peg.4077 Bradyrhizobium japonicum USDA 110 hypothetical protein GeneID:1048565, NP_770717.1, bll4077, cmr|NT01BJ5187, dbj|BAC49342.1, gi|27352339, gi|27379188, gnl|md5|061011d0d26b17526aa82902, img|637371644, kegg|bja:bll4077, ref|NP_770717.1, tr|Q89MW5
7.3e-101 2 fig|323098.6.peg.1888 Nitrobacter winogradskyi Nb-255 FIG003573: hypothetical protein cmr|NT01NW1936, geneID|3674547, gi|75675885, gnl|md5|89021bec72b41bf6aae16e85, locus|Nwi_1693, protein_id|YP_318306.1
4e-37 2 fig|287752.3.peg.2303 Aurantimonas manganoxydans SI85-9A1 Uncharacterized protein YybS gb|EAS50165.1, gi|90336424, gi|90419487, gnl|md5|e9d93d1b7834ad93dec57001, img|639105542, ref|ZP_01227397.1, tr|Q1YIF2
4e-37 2 fig|314269.3.peg.2274 Aurantimonas sp. SI85-9A1 Uncharacterized protein YybS gb|EAS50165.1, gi|90336424, gi|90419487, gnl|md5|e9d93d1b7834ad93dec57001, img|639105542, ref|ZP_01227397.1, tr|Q1YIF2
2.1e-031 2 fig|114615.4.peg.3205 Bradyrhizobium sp. ORS278 FIG003573: hypothetical protein emb|CAL77101.1, geneID|5118503, gi|146193090, gi|146340284, gnl|md5|0fd04665bbd739ec7b84a4da, img|640520940, kegg|bra:BRADO3307, locus|BRADO3307, protein_id|YP_001205332.1, ref|YP_001205332.1, tr|A4YT75
3.4e-030 2 fig|395965.4.peg.993 Methylocella silvestris BL2 FIG003573: hypothetical protein gb|ACK49870.1, geneID|7093334, gi|217502461, gi|217977085, gnl|md5|5ab4c86f9bcd0688b5c6706a, img|642448871, kegg|msl:Msil_0900, locus|Msil_0900, protein_id|YP_002361232.1, ref|YP_002361232.1, tr|B8ESI0
3e-27 2 fig|1004954.3.peg.467 Brucella suis bv. 1 str. S2 FIG003573: hypothetical protein
3e-27 2 fig|1112912.3.peg.438 Brucella suis VBI22 FIG003573: hypothetical protein gi|358257742, locus|BSVBI22_A0454, protein_id|AEU05477.1
3e-27 2 fig|204722.5.peg.468 Brucella suis 1330 FIG003573: hypothetical protein cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, geneID|1166114, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, locus|BR0453, patric|cds.000944.230277, patric|cds.000958.751692, protein_id|NP_697481.1, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
3e-27 2 fig|470137.3.peg.1858 Brucella suis ATCC 23445 FIG003573: hypothetical protein BSUIS_A0479, GeneID:5838798, YP_001627137.1, cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, patric|cds.000944.230277, patric|cds.000958.751692, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
3e-27 2 fig|470137.4.peg.2037 Brucella suis ATCC 23445 FIG003573: hypothetical protein cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, geneID|5838798, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, locus|BSUIS_A0479, patric|cds.000944.230277, patric|cds.000958.751692, protein_id|YP_001627137.1, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
3e-27 2 fig|520487.3.peg.2154 Brucella suis bv. 3 str. 686 FIG003573: hypothetical protein cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, patric|cds.000944.230277, patric|cds.000958.751692, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
3e-27 2 fig|520488.3.peg.549 Brucella suis bv. 4 str. 40 FIG003573: hypothetical protein cmr|BR_0453, gb|AAN29396.1, gb|ABY37567.1, gi|163673456, gi|163842733, gi|23347247, gi|23501354, gi|254703804, gnl|md5|c257eb0870eb85bc0bc0dab0, img|637329397, img|641359192, kegg|bms:BR0453, kegg|bmt:BSUIS_A0479, patric|cds.000944.230277, patric|cds.000958.751692, ref|NP_697481.1, ref|YP_001627137.1, ref|ZP_05165632.1, tr|B0CKD7, tr|Q8G275
1e-26 2 fig|224914.11.peg.1647 Brucella melitensis bv. 1 str. 16M Uncharacterized protein YybS cmr|NT01BM1838, gb|AAL52663.1, geneID|1197193, gi|17983487, gi|17987765, gi|256044169, gnl|md5|54c69fd0cf52efdc705ea4e9, img|637248532, kegg|bme:BMEI1482, locus|BMEI1482, patric|cds.003275.80392, protein_id|NP_540399.1, ref|NP_540399.1, ref|ZP_05447076.1, tr|Q8YFN8

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