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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 6e-131 | 7 | fig|386043.6.peg.1171 | Listeria welshimeri serovar 6b str. SLCC5334 | Phage integrase | GO:0003677, GO:0006310, GO:0015074, cmr|NT01LW1223, emb|CAK20621.1, gi|116741497, gi|116872619, gnl|md5|94a80df276789b00fb37341e, img|639706092, kegg|lwe:lwe1203, lwe1203, ref|YP_849400.1, tr|A0AHY9 |
| 7e-85 | 6 | fig|1041521.3.peg.1051 | Lactobacillus salivarius GJ-24 | Integrase | gi|335349003, locus|LSGJ_01049, protein_id|EGM50503.1 |
| 3.6e-085 | 5 | fig|712961.3.peg.644 | Lactobacillus salivarius CECT 5713 | Integrase | |
| 5e-84 | 5 | fig|1040964.3.peg.429 | Lactobacillus ruminis SPM0211 | Integrase | gi|335996747, locus|LRU_00444, protein_id|ZP_08562664.1 |
| 4.5e-083 | 5 | fig|695560.3.peg.1081 | Lactobacillus amylovorus GRL 1112 | Integrase | |
| 6.4e-082 | 5 | fig|749495.4.peg.539 | Enterococcus faecalis TX4248 | Integrase | InterPro:IPR002104, gi|307268429, locus|HMPREF9498_00567, protein_id|ZP_07549807.1 |
| 1e-81 | 5 | fig|749494.3.peg.108 | Enterococcus faecalis TX4244 | Integrase | InterPro:IPR002104, gi|315148958, locus|HMPREF9497_00114, protein_id|EFT92974.1 |
| 2e-81 | 5 | fig|749496.3.peg.2632 | Enterococcus faecalis TX0012 | Integrase | InterPro:IPR002104, gi|315149122, locus|HMPREF9499_02762, protein_id|EFT93138.1 |
| 7.9e-085 | 4 | fig|767455.3.peg.977 | Lactobacillus delbrueckii subsp. bulgaricus ND02 | Integrase | gi|312280295, locus|LDBND_0972, protein_id|ADQ61014.1 |
| 2e-84 | 4 | fig|936140.3.peg.638 | Lactobacillus farciminis KCTC 3681 | Integrase | |
| 1.5e-083 | 4 | fig|641112.4.peg.3886 | Ruminococcus flavefaciens FD-1 | Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) | gnl|md5|eca1a128219a2426bb2a64ec |
| 3.4e-083 | 4 | fig|657321.5.peg.1828 | Ruminococcus bromii L2-63 | Integrase | |
| 1.3e-082 | 4 | fig|888064.3.peg.1680 | Enterococcus italicus DSM 15952 | Integrase | |
| 2.0e-082 | 4 | fig|565648.4.peg.772 | Enterococcus faecalis JH1 | Integrase | gb|EEU73732.1, gi|256986430, gi|257078400, gnl|md5|5d9e73603febdbe08a1bade5, ref|ZP_05572761.1 |
| 7.2e-085 | 3 | fig|428126.7.peg.1392 | Clostridium spiroforme DSM 1552 | Integrase | InterPro:IPR002104, InterPro:IPR011010, InterPro:IPR013762, gi|169350753, gnl|md5|01a6a38ba5e1a067dcd52a53, locus|CLOSPI_01526, protein_id|ZP_02867691.1 |
| 2.1e-084 | 3 | fig|246199.4.peg.2663 | Ruminococcus albus 8 | Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) | gi|294641740, gnl|md5|6fc1a116dc383a72f5f725ba, locus|CUS_2420, protein_id|ZP_06719647.1 |
| 7.6e-083 | 3 | fig|484020.3.peg.1068 | Bifidobacterium bifidum BGN4 | Integrase | PFAM:PF00589.13, gene_name|xerC, gi|389890607, locus|BBB_1082, protein_id|AFL04674.1 |
| 7.6e-083 | 3 | fig|702459.3.peg.1194 | Bifidobacterium bifidum PRL2010 | Integrase | geneID|9889291, gi|311064529, locus|BBPR_1154, protein_id|YP_003971254.1 |
| 7.6e-083 | 3 | fig|883062.5.peg.1133 | Bifidobacterium bifidum S17 | Integrase | geneID|9847317, gi|310287616, locus|BBIF_1095, protein_id|YP_003938874.1 |
| 2.0e-082 | 3 | fig|702445.3.peg.1248 | Bacteroides vulgatus EK4.2 | Integrase | gb|EEU73732.1, gi|256986430, gi|257078400, gi|294780397, gnl|md5|5d9e73603febdbe08a1bade5, locus|CUI_2688, protein_id|ZP_06745764.1, ref|ZP_05572761.1 |
| 2.0e-082 | 3 | fig|749517.3.peg.1571 | Enterococcus faecalis TX1467 | Integrase | InterPro:IPR002104, gi|329575632, locus|HMPREF9520_01719, protein_id|EGG57165.1 |
| 7e-82 | 3 | fig|575593.3.peg.459 | Lachnospiraceae oral taxon 107 str. F0167 | Integrase | gi|331002078, locus|HMPREF0491_00459, protein_id|ZP_08325597.1 |
| 6e-131 | 2 | fig|386043.9.peg.1210 | Listeria welshimeri serovar 6b str. SLCC5334 | Phage integrase | GO:0003677, GO:0006310, GO:0015074, cmr|NT01LW1223, emb|CAK20621.1, geneID|4465838, gi|116741497, gi|116872619, gnl|md5|94a80df276789b00fb37341e, img|639706092, kegg|lwe:lwe1203, locus|lwe1203, protein_id|YP_849400.1, ref|YP_849400.1, tr|A0AHY9 |
| 1.3e-129 | 2 | fig|637381.3.peg.1296 | Listeria monocytogenes 08-5923 | Phage integrase | geneID|8758074, gi|284994715, gnl|md5|50ad27a6e1ef92bc3c687d67, locus|LM5923_1279, protein_id|YP_003416483.1 |
| 1.3e-129 | 2 | fig|653938.3.peg.1341 | Listeria monocytogenes 08-5578 | Phage integrase | geneID|8748312, gi|284801573, gnl|md5|50ad27a6e1ef92bc3c687d67, locus|LM5578_1326, protein_id|YP_003413438.1 |
| 2e-110 | 2 | fig|749499.3.peg.392 | Enterococcus faecalis TX0031 | site-specific recombinase, phage integrase family | InterPro:IPR002104, gi|315154177, locus|HMPREF9502_00409, protein_id|EFT98193.1 |
| 2.5e-085 | 2 | fig|575607.3.peg.791 | Lactobacillus jensenii SJ-7A-US | Integrase | gnl|md5|8a718da99b7deb93fb3f50fc |
| 3.6e-085 | 2 | fig|768728.4.peg.192 | Lactobacillus salivarius ACS-116-V-Col5a | Integrase | gi|301299373, locus|HMPREF9269_0479, protein_id|ZP_07205654.1 |
| 3.3e-082 | 2 | fig|431943.8.peg.2705 | Clostridium kluyveri DSM 555 | Integrase | GO:0003677, GO:0006310, GO:0015074, dbj|BAH07351.1, gb|EDK34606.1, geneID|5393600, gi|146348070, gi|153955212, gi|219569367, gi|219855643, gnl|md5|b4ae590fac0f4bf530f271f9, img|640859833, kegg|ckl:CKL_2594, kegg|ckr:CKR_2300, locus|CKL_2594, protein_id|YP_001395977.1, ref|YP_001395977.1, ref|YP_002472765.1, tr|A5N0G0, tr|B9E4C6 |
| 3.3e-082 | 2 | fig|583346.6.peg.2600 | Clostridium kluyveri NBRC 12016 | Integrase | GO:0003677, GO:0006310, GO:0015074, dbj|BAH07351.1, gb|EDK34606.1, geneID|7273860, gi|146348070, gi|153955212, gi|219569367, gi|219855643, gnl|md5|b4ae590fac0f4bf530f271f9, img|640859833, kegg|ckl:CKL_2594, kegg|ckr:CKR_2300, locus|CKR_2300, protein_id|YP_002472765.1, ref|YP_001395977.1, ref|YP_002472765.1, tr|A5N0G0, tr|B9E4C6 |