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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 5e-89 | 12 | fig|380703.7.peg.692 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Type IV fimbrial biogenesis protein PilY1 | cmr|AHA_0690, gb|ABK39451.1, geneID|4487682, gi|117562503, gi|117621096, gnl|md5|b87637da6b4ebd6a6bdf8321, img|639713270, kegg|aha:AHA_0690, locus|AHA_0690, protein_id|YP_855232.1, ref|YP_855232.1, tr|A0KG47 |
| 5e-89 | 9 | fig|380703.5.peg.663 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Type IV fimbrial biogenesis protein PilY1 | ABK39451.1, AHA_0690, cmr|AHA_0690, gb|ABK39451.1, gi|117562503, gi|117621096, gnl|md5|b87637da6b4ebd6a6bdf8321, img|639713270, kegg|aha:AHA_0690, ref|YP_855232.1, tr|A0KG47 |
| 0.0 | 8 | fig|323261.6.peg.2679 | Nitrosococcus oceani ATCC 19707 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT01NO2618, gb|ABA58732.1, gb|EDZ67162.1, geneID|3705066, gi|207089891, gi|254433558, gi|76884051, gi|77165737, gnl|md5|96d2b3c1ab20f2cb62666999, img|637738753, kegg|noc:Noc_2274, locus|Noc_2274, protein_id|YP_344262.1, ref|YP_344262.1, ref|ZP_05047066.1, tr|B6BZ27, tr|Q3J8W4 |
| 0.0 | 8 | fig|473788.3.peg.1395 | Nitrosococcus oceani AFC27 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT01NO2618, gb|ABA58732.1, gb|EDZ67162.1, gi|207089891, gi|254433558, gi|76884051, gi|77165737, gnl|md5|96d2b3c1ab20f2cb62666999, img|637738753, kegg|noc:Noc_2274, ref|YP_344262.1, ref|ZP_05047066.1, tr|B6BZ27, tr|Q3J8W4 |
| 2.8e-189 | 8 | fig|472759.3.peg.993 | Nitrosococcus halophilus Nc4 | Type IV fimbrial biogenesis protein PilY1 | geneID|8915882, gi|292491029, gnl|md5|1963aaf629d38079bd8b27b3, locus|Nhal_0907, protein_id|YP_003526468.1 |
| 5.0e-97 | 7 | fig|314565.5.peg.1750 | Xanthomonas campestris pv. campestris str. 8004 | Type IV fimbrial biogenesis protein PilY1 | gb|AAY48691.1, geneID|3380080, gi|66573281, gi|66767949, gnl|md5|66ff4342ed6bd74d4186dd51, img|637657116, kegg|xcb:XC_1625, locus|XC_1625, protein_id|YP_242711.1, ref|YP_242711.1, tr|Q4UW82 |
| 1.0e-94 | 7 | fig|316273.3.peg.2836 | Xanthomonas campestris pv. vesicatoria str. 85-10 | Type IV fimbrial biogenesis protein PilY1 | GeneID:3733116, LocusTag:XCV2815, YP_364546.1, cmr|NT03XC3089, emb|CAJ24494.1, gi|78036801, gi|78048371, gnl|md5|8441059f4aa6b9262a5344d4, img|637758539, kegg|xcv:XCV2815, ref|YP_364546.1, tr|Q3BRR7 |
| 1.3e-086 | 7 | fig|391008.3.peg.1403 | Stenotrophomonas maltophilia R551-3 | Type IV fimbrial biogenesis protein PilY1 | gb|ACF51087.1, geneID|6475237, gi|194347964, gi|194365160, gnl|md5|697595fb157a134228929517, img|640034210, img|642730550, kegg|smt:Smal_1382, locus|Smal_1382, protein_id|YP_002027770.1, ref|YP_002027770.1, tr|B4SQN2 |
| 7.1e-187 | 6 | fig|62928.7.peg.2959 | Azoarcus sp. BH72 | Type IV fimbrial biogenesis protein PilY1 | emb|CAL95533.1, geneID|4609578, gene_name|pilY1B, gi|119671620, gi|119899207, gnl|md5|3df2e67f9bccb3f4e01cd5f1, img|639788073, kegg|azo:azo2917, locus|azo2917, protein_id|YP_934420.1, ref|YP_934420.1, tr|A1K9M8 |
| 3e-132 | 6 | fig|937450.3.peg.32 | Oxalobacteraceae bacterium IMCC9480 | Type IV fimbrial biogenesis protein PilY1 | gi|329900746, locus|IMCC9480_2898, protein_id|ZP_08272566.1 |
| 6.3e-99 | 6 | fig|228410.6.peg.1960 | Nitrosomonas europaea ATCC 19718 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT01NE1931, emb|CAD85658.1, geneID|1082699, gene_name|pilY1, gi|30180744, gi|30249707, gnl|md5|365fdace8157a1f6cd88c1e0, img|637428083, kegg|neu:NE1747, locus|NE1747, protein_id|NP_841777.1, ref|NP_841777.1, tr|Q82TX2 |
| 3.0e-93 | 6 | fig|335283.5.peg.2155 | Nitrosomonas eutropha C91 | Type IV fimbrial biogenesis protein PilY1 | GeneID:4272587, Neut_1833, YP_748031.1, gb|ABI60066.1, gi|114308823, gi|114331809, gnl|md5|ee4599789360a70286214366, img|638132064, kegg|net:Neut_1833, ref|YP_748031.1, tr|Q0AF16 |
| 1.9e-90 | 6 | fig|291331.3.peg.2243 | Xanthomonas oryzae pv. oryzae KACC10331 | Type IV fimbrial biogenesis protein PilY1 | GENE:pilY1, GeneID:3265185, LocusTag:XOO3196, YP_201835.1, cmr|NT01XO3990, gb|AAW76450.1, gi|58427413, gi|58582819, gnl|md5|c6a350e107f1ac086ea023b4, img|637633347, kegg|xoo:XOO3196, pilY1, ref|YP_201835.1, tr|Q5GXX1 |
| 1.9e-90 | 6 | fig|291331.8.peg.3544 | Xanthomonas oryzae pv. oryzae KACC10331 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT01XO3990, gb|AAW76450.1, geneID|3265185, gene_name|pilY1, gi|58427413, gi|58582819, gnl|md5|c6a350e107f1ac086ea023b4, img|637633347, kegg|xoo:XOO3196, locus|XOO3196, protein_id|YP_201835.1, ref|YP_201835.1, tr|Q5GXX1 |
| 1.4e-085 | 6 | fig|207954.4.peg.1364 | Neptuniibacter caesariensis | Type IV fimbrial biogenesis protein PilY1 | gnl|md5|5c38be4d7f26d5770deaf6de |
| 0.0 | 5 | fig|155920.4.peg.4080 | Xylella fastidiosa subsp. sandyi Ann-1 | Type IV fimbrial biogenesis protein PilY1 | gb|EAO31443.1, gi|71729327, gi|71900915, gnl|md5|5023ca10bac7d41f17f58d19, img|638358823, locus|XfasoDRAFT_1243, protein_id|ZP_00683030.1, ref|ZP_00683030.1, tr|Q3R2H6 |
| 0.000000 | 5 | fig|405440.3.peg.1605 | Xylella fastidiosa M12 | Type IV fimbrial biogenesis protein PilY1 | ACA12659.1, Xfasm12_1765, gb|ACA12659.1, gi|167965649, gi|170730856, gnl|md5|2d26e753787db0a1dc9326c2, img|641649737, kegg|xfm:Xfasm12_1765, ref|YP_001776289.1, tr|B0U480 |
| 0.000000 | 5 | fig|405440.5.peg.2068 | Xylella fastidiosa M12 | Type IV fimbrial biogenesis protein PilY1 | gb|ACA12659.1, geneID|6121003, gi|167965649, gi|170730856, gnl|md5|2d26e753787db0a1dc9326c2, img|641649737, kegg|xfm:Xfasm12_1765, locus|Xfasm12_1765, protein_id|YP_001776289.1, ref|YP_001776289.1, tr|B0U480 |
| 0.000000 | 5 | fig|183190.5.peg.2065 | Xylella fastidiosa Temecula1 | Type IV fimbrial biogenesis protein PilY1 | gb|ACB93107.1, geneID|1142953, gene_name|pilY1, gi|182632331, gi|182682221, gi|28199488, gnl|md5|06b5d4b89dac2aaf615c99bf, img|641703213, kegg|xfn:XfasM23_1703, locus|PD1611, protein_id|NP_779802.1, ref|YP_001830381.1, tr|B2I7U2 |
| 0.000000 | 5 | fig|405441.5.peg.2097 | Xylella fastidiosa M23 | Type IV fimbrial biogenesis protein PilY1 | gb|ACB93107.1, geneID|6202858, gi|182632331, gi|182682221, gnl|md5|06b5d4b89dac2aaf615c99bf, img|641703213, kegg|xfn:XfasM23_1703, locus|XfasM23_1703, protein_id|YP_001830381.1, ref|YP_001830381.1, tr|B2I7U2 |
| 0.000000 | 5 | fig|945689.3.peg.1755 | Xylella fastidiosa EB92.1 | Type IV fimbrial biogenesis protein PilY1 | gi|338178559, locus|XFEB_01481, protein_id|EGO81544.1 |
| 0.000000 | 5 | fig|155919.4.peg.261 | Xylella fastidiosa Dixon | Type IV fimbrial biogenesis protein PilY1 | gi|71274595, gnl|md5|33f50d67a76aff61b640d706, locus|XfasaDRAFT_1903, protein_id|ZP_00650883.1 |
| 0.000000 | 5 | fig|160492.11.peg.507 | Xylella fastidiosa 9a5c | Type IV fimbrial biogenesis protein PilY1 | geneID|1126008, gi|15837080, gnl|md5|36a2169a9bbf3f04c0ff19d9, locus|XF0478, protein_id|NP_297768.1 |
| 0.0 | 5 | fig|183190.1.peg.1545 | Xylella fastidiosa Temecula1 | Type IV fimbrial biogenesis protein PilY1 | GeneID:1142953, NP_779802.1, PD1611, gb|AAO29451.1, gi|28057603, gi|28199488, gnl|md5|8d4fd68cfe4ce088e02c87c6, img|637384415, kegg|xft:PD1611, pilY1, ref|NP_779802.1, tr|Q87B49 |
| 0.0 | 5 | fig|160492.1.peg.475 | Xylella fastidiosa 9a5c | Type IV fimbrial biogenesis protein PilY1 | COG:COG3419, GeneID:1126008, NP_297768.1, XF0478, cmr|NT01XF0562, gb|AAF83288.1, gb|AE003897_13, gi|15837080, gi|9105326, gnl|md5|e9e6b67653e4846f7e80094d, img|637042921, kegg|xfa:XF0478, ref|NP_297768.1, tr|Q9PG24 |
| 0.000000 | 5 | fig|788929.3.peg.562 | Xylella fastidiosa subsp. fastidiosa GB514 | Type IV fimbrial biogenesis protein PilY1 | |
| 0.0 | 5 | fig|338963.3.peg.167 | Pelobacter carbinolicus DSM 2380 | Type IV fimbrial biogenesis protein PilY1 | GeneID:3724847, LocusTag:Pcar_2155, YP_357564.1, cds.167, gb|ABA89394.1, gi|77545832, gi|77919749, gnl|md5|6495fe2b554540e243e7fdeb, img|637751756, kegg|pca:Pcar_2155, ref|YP_357564.1, tr|Q3A2L3 |
| 1e-173 | 5 | fig|857087.3.peg.2179 | Methylomonas methanica MC09 | Type IV fimbrial biogenesis protein PilY1 | InterPro:IPR008707, geneID|10672146, gi|333983840, locus|Metme_2146, protein_id|YP_004513050.1 |
| 5.0e-97 | 5 | fig|314565.3.peg.2115 | Xanthomonas campestris pv. campestris str. 8004 | Type IV fimbrial biogenesis protein PilY1 | GeneID:3380080, LocusTag:XC_1625, YP_242711.1, gb|AAY48691.1, gi|66573281, gi|66767949, gnl|md5|66ff4342ed6bd74d4186dd51, img|637657116, kegg|xcb:XC_1625, ref|YP_242711.1, tr|Q4UW82 |
| 2.8e-90 | 5 | fig|360094.4.peg.3569 | Xanthomonas oryzae pv. oryzae PXO99A | Type IV fimbrial biogenesis protein PilY1 | dbj|BAE69786.1, gb|ACD60057.1, geneID|6306991, gene_name|pilY1, gi|188522112, gi|188577660, gi|84368628, gi|84624688, gnl|md5|bf0e510319b67ac109d7dfdb, img|637850556, img|642640738, kegg|xom:XOO_3031, kegg|xop:PXO_01324, locus|PXO_01324, protein_id|YP_001914589.1, ref|YP_001914589.1, ref|YP_452060.1, tr|B2SVI3, tr|Q2P0Z1 |
| 1.4e-089 | 5 | fig|377629.3.peg.2952 | Teredinibacter turnerae T7901 | Type IV fimbrial biogenesis protein PilY1 | gb|ACR12933.1, geneID|8213132, gi|237685669, gi|254787110, gnl|md5|d26388a72c98b031205b3b26, kegg|ttu:TERTU_3172, locus|TERTU_3172, protein_id|YP_003074539.1, ref|YP_003074539.1, tr|C5BPS2 |
| 9.6e-089 | 5 | fig|338963.6.peg.2336 | Pelobacter carbinolicus DSM 2380 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT01PC2416, geneID|3724847, gene_name|pilY1, gi|77919749, gnl|md5|64cec6155825a2d0a7de8b43, locus|Pcar_2155, protein_id|YP_357564.1 |
| 1.3e-086 | 5 | fig|391008.4.peg.1408 | Stenotrophomonas maltophilia R551-3 | Type IV fimbrial biogenesis protein PilY1 | gb|ACF51087.1, geneID|6475237, gi|194347964, gi|194365160, gnl|md5|697595fb157a134228929517, img|640034210, img|642730550, kegg|smt:Smal_1382, locus|Smal_1382, protein_id|YP_002027770.1, ref|YP_002027770.1, tr|B4SQN2 |
| 0.0 | 4 | fig|323261.3.peg.1307 | Nitrosococcus oceani ATCC 19707 | Type IV fimbrial biogenesis protein PilY1 | GeneID:3705066, LocusTag:Noc_2274, YP_344262.1, cmr|NT01NO2618, gb|ABA58732.1, gb|EDZ67162.1, gi|207089891, gi|254433558, gi|76884051, gi|77165737, gnl|md5|96d2b3c1ab20f2cb62666999, img|637738753, kegg|noc:Noc_2274, ref|YP_344262.1, ref|ZP_05047066.1, tr|B6BZ27, tr|Q3J8W4 |
| 7.1e-187 | 4 | fig|62928.8.peg.2957 | Azoarcus sp. BH72 | Type IV fimbrial biogenesis protein PilY1 | emb|CAL95533.1, geneID|4609578, gene_name|pilY1B, gi|119671620, gi|119899207, gnl|md5|3df2e67f9bccb3f4e01cd5f1, img|639788073, kegg|azo:azo2917, locus|azo2917, protein_id|YP_934420.1, ref|YP_934420.1, tr|A1K9M8 |
| 6.3e-99 | 4 | fig|228410.1.peg.1676 | Nitrosomonas europaea ATCC 19718 | Type IV fimbrial biogenesis protein PilY1 | GeneID:1082699, NE1747, NP_841777.1, cmr|NT01NE1931, emb|CAD85658.1, gi|30180744, gi|30249707, gnl|md5|365fdace8157a1f6cd88c1e0, img|637428083, kegg|neu:NE1747, pilY1, ref|NP_841777.1, tr|Q82TX2 |
| 1.0e-94 | 4 | fig|316273.10.peg.3071 | Xanthomonas campestris pv. vesicatoria str. 85-10 | Type IV fimbrial biogenesis protein PilY1 | cmr|NT03XC3089, emb|CAJ24494.1, geneID|3733116, gi|78036801, gi|78048371, gnl|md5|8441059f4aa6b9262a5344d4, img|637758539, kegg|xcv:XCV2815, locus|XCV2815, protein_id|YP_364546.1, ref|YP_364546.1, tr|Q3BRR7 |
| 0.0 | 3 | fig|742013.3.peg.3889 | Delftia sp. Cs1-4 | Type IV fimbrial biogenesis protein PilY1 | InterPro:IPR002372, InterPro:IPR008707, geneID|10640709, gi|333915458, locus|DelCs14_3847, protein_id|YP_004489190.1 |
| 3.5e-092 | 3 | fig|427082.3.peg.1352 | Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 | Type IV fimbrial biogenesis protein PilY1 | gi|294665191, gnl|md5|f3421c1ab8796445025dcbd5, locus|XAUC_12280, protein_id|ZP_06730491.1 |
| 2.8e-90 | 3 | fig|360094.3.peg.3495 | Xanthomonas oryzae pv. oryzae PXO99A | Type IV fimbrial biogenesis protein PilY1 | dbj|BAE69786.1, gb|ACD60057.1, geneID|6306991, gene_name|pilY1, gi|188522112, gi|188577660, gi|84368628, gi|84624688, gnl|md5|bf0e510319b67ac109d7dfdb, img|637850556, img|642640738, kegg|xom:XOO_3031, kegg|xop:PXO_01324, locus|PXO_01324, protein_id|YP_001914589.1, ref|YP_001914589.1, ref|YP_452060.1, tr|B2SVI3, tr|Q2P0Z1 |
| 6.4e-276 | 2 | fig|398578.5.peg.2922 | Delftia acidovorans SPH-1 | Type IV fimbrial biogenesis protein PilY1 | geneID|5748466, gi|160898326, gnl|md5|cd9e20c24de25f0d8f757334, locus|Daci_2885, protein_id|YP_001563908.1 |
| 8.5e-263 | 2 | fig|398578.3.peg.2876 | Delftia acidovorans SPH-1 | Type IV fimbrial biogenesis protein PilY1 | ABX35523.1, Daci_2885, gb|ABX35523.1, gi|160363910, gi|160898326, gnl|md5|55e7a645efd8f8ec6fef5f82, img|639976039, img|641297985, kegg|dac:Daci_2885, ref|YP_001563908.1, tr|A9BZC3 |
| 3e-98 | 2 | fig|391735.7.peg.570 | Verminephrobacter eiseniae EF01-2 | Type IV fimbrial biogenesis protein PilY1 | gb|ABM56288.1, geneID|4693608, gi|121552139, gi|121607499, gnl|md5|7c0a4fe32272a7336877f5cf, img|639848282, kegg|vei:Veis_0504, locus|Veis_0504, protein_id|YP_995306.1, ref|YP_995306.1, tr|A1WF81 |