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The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki] [RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ] SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov |
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| Sim. Sc. | Cluster Size | PEG | Genome | Function | Aliases |
|---|---|---|---|---|---|
| 1.4e-034 | 4 | fig|535206.4.peg.1045 | Enterococcus faecium E1162 | Helix-turn-helix motif | gb|EEV42450.1, gb|EEV44723.1, gb|EEV53209.1, gi|257813692, gi|257817395, gi|257826583, gi|257879464, gi|257881737, gi|257890223, gi|293560441, gnl|md5|bbd107f65987647ab84ea02b, locus|EfmE1162_1088, protein_id|ZP_06676933.1, ref|ZP_05659117.1, ref|ZP_05661390.1, ref|ZP_05669876.1 |
| 1.4e-034 | 4 | fig|547468.4.peg.965 | Enterococcus faecium U0317 | Helix-turn-helix motif | gb|EEV42450.1, gb|EEV44723.1, gb|EEV53209.1, gi|257813692, gi|257817395, gi|257826583, gi|257879464, gi|257881737, gi|257890223, gi|294621637, gnl|md5|bbd107f65987647ab84ea02b, locus|EfmU0317_1078, protein_id|ZP_06700802.1, ref|ZP_05659117.1, ref|ZP_05661390.1, ref|ZP_05669876.1 |
| 1.4e-034 | 4 | fig|565656.3.peg.1375 | Enterococcus faecium 1,230,933 | Helix-turn-helix motif | gb|EEV42450.1, gb|EEV44723.1, gb|EEV53209.1, gi|257813692, gi|257817395, gi|257826583, gi|257879464, gi|257881737, gi|257890223, gnl|md5|bbd107f65987647ab84ea02b, ref|ZP_05659117.1, ref|ZP_05661390.1, ref|ZP_05669876.1 |
| 1.4e-034 | 4 | fig|565657.5.peg.876 | Enterococcus faecium 1,231,502 | Helix-turn-helix motif | gb|EEV42450.1, gb|EEV44723.1, gb|EEV53209.1, gi|257813692, gi|257817395, gi|257826583, gi|257879464, gi|257881737, gi|257890223, gnl|md5|bbd107f65987647ab84ea02b, ref|ZP_05659117.1, ref|ZP_05661390.1, ref|ZP_05669876.1 |
| 1.4e-034 | 4 | fig|749520.3.peg.2406 | Enterococcus faecium TX0082 | Helix-turn-helix motif | |
| 0 | 2 | fig|333849.6.peg.4316 | Enterococcus faecium DO | Helix-turn-helix motif | CDD:28977, GO:0043565, gb|EAN10707.1, gi|258615805, gi|68196278, gi|69244687, gnl|md5|43e9316eb55c644cde6e5742, img|638350825, locus|EfaeD_010100008846, protein_id|ZP_05713575.1, ref|ZP_00602951.1, ref|ZP_05713575.1, tr|Q3Y2K6 |
| 2.5e-052 | 2 | fig|565658.4.peg.354 | Enterococcus faecium 1,231,501 | Helix-turn-helix motif | gnl|md5|27426c4e0a26aa35f078947a |
| 9.3e-052 | 2 | fig|565660.4.peg.1834 | Enterococcus faecium 1,231,410 | Helix-turn-helix motif | gnl|md5|8908409280e71459e985df27 |
| 9.3e-052 | 2 | fig|565661.4.peg.2037 | Enterococcus faecium 1,231,408 | Helix-turn-helix motif | gnl|md5|8908409280e71459e985df27 |
| 9.3e-052 | 2 | fig|565664.3.peg.2424 | Enterococcus faecium C68 | Helix-turn-helix motif | gnl|md5|8908409280e71459e985df27 |
| 3.0e-032 | 2 | fig|933356.3.peg.2553 | Enterococcus faecium E4452 | Helix-turn-helix motif | gi|364089109, locus|EfmE4452_2661, protein_id|EHM31825.1 |
| 2.6e-030 | 2 | fig|565643.5.peg.1605 | Enterococcus faecalis DS5 | Helix-turn-helix motif | gb|EEU65198.1, gi|256948566, gi|256958070, gnl|md5|cbecaa62114749609e8d5f5d, ref|ZP_05562241.1 |
| 4.5e-22 | 2 | fig|193567.1.peg.411 | Streptococcus pyogenes SSI-1 | Phage transcriptional regulator | GO:0043565, GeneID:1065511, NP_801673.1, SPs0411, cmr|NT04SP1628, cmr|NT06SP0438, dbj|BAC63506.1, gb|AAM80062.1, gi|21905199, gi|21910991, gi|28810569, gi|28876485, gi|28895323, gnl|md5|3265d8d5a96ac6d55e5d9533, img|637307996, img|637402373, img|638296911, kegg|spg:SpyM3_1455, kegg|sps:SPs0411, ref|NP_665259.1, ref|NP_795663.1, ref|NP_801673.1, tr|Q8K677 |
| 4.5e-22 | 2 | fig|198466.1.peg.1455 | Streptococcus pyogenes MGAS315 | Phage transcriptional regulator | GO:0043565, GeneID:1009770, NP_665259.1, SpyM3_1455, cmr|NT04SP1628, cmr|NT06SP0438, dbj|BAC63506.1, gb|AAM80062.1, gi|21905199, gi|21910991, gi|28810569, gi|28876485, gi|28895323, gnl|md5|3265d8d5a96ac6d55e5d9533, img|637307996, img|637402373, img|638296911, kegg|spg:SpyM3_1455, kegg|sps:SPs0411, ref|NP_665259.1, ref|NP_795663.1, ref|NP_801673.1, tr|Q8K677 |
| 1.3e-019 | 2 | fig|193567.3.peg.446 | Streptococcus pyogenes SSI-1 | Phage transcriptional regulator | GO:0043565, gb|AAT86158.1, geneID|1065511, gi|28895323, gi|50902443, gi|50913369, gnl|md5|c8aefd70fb13874f8a0cc032, img|637523154, kegg|spa:M6_Spy0023, locus|SPs0411, protein_id|NP_801673.1, ref|YP_059341.1, tr|Q5XEK5 |
| 1.3e-019 | 2 | fig|198466.3.peg.1569 | Streptococcus pyogenes MGAS315 | Phage transcriptional regulator | GO:0043565, gb|AAT86158.1, geneID|1009770, gi|21910991, gi|50902443, gi|50913369, gnl|md5|c8aefd70fb13874f8a0cc032, img|637523154, kegg|spa:M6_Spy0023, locus|SpyM3_1455, protein_id|NP_665259.1, ref|YP_059341.1, tr|Q5XEK5 |
| 1.3e-019 | 2 | fig|286636.1.peg.23 | Streptococcus pyogenes MGAS10394 | Phage transcriptional regulator | GO:0043565, M6_Spy0023, YP_059341.1, gb|AAT86158.1, gi|50902443, gi|50913369, gnl|md5|c8aefd70fb13874f8a0cc032, img|637523154, kegg|spa:M6_Spy0023, ref|YP_059341.1, tr|Q5XEK5 |
| 1.3e-019 | 2 | fig|286636.3.peg.24 | Streptococcus pyogenes MGAS10394 | Phage transcriptional regulator | GO:0043565, gb|AAT86158.1, geneID|2941125, gi|50902443, gi|50913369, gnl|md5|c8aefd70fb13874f8a0cc032, img|637523154, kegg|spa:M6_Spy0023, locus|M6_Spy0023, protein_id|YP_059341.1, ref|YP_059341.1, tr|Q5XEK5 |
| 3.9e-019 | 2 | fig|644042.3.peg.469 | Lactobacillus plantarum JDM1 | phage transcriptional regulator, Cro/CI family | gb|ACT61364.1, geneID|8189357, gi|254044571, gi|254555644, gnl|md5|35c0c56338f21481a55d00df, kegg|lpj:JDM1_0475, locus|JDM1_0475, protein_id|YP_003062061.1, ref|YP_003062061.1 |
| 4.4e-019 | 2 | fig|453362.3.peg.1072 | Streptococcus pneumoniae CDC1873-00 | Phage transcriptional regulator, Cro/CI family | EDT50968.1, GO:0043565, SP187300_0114, emb|CAR67892.1, gb|ACO18865.1, gb|EDT50968.1, gb|EDT96714.1, gi|168483683, gi|168493703, gi|172042922, gi|183576186, gi|220673431, gi|221230971, gi|225723012, gi|225853640, gnl|md5|5851ddea4742ed53f11c53a2, img|642186037, img|642212719, kegg|sjj:SPJ_0036, kegg|sne:SPN23F_00310, ref|YP_002510123.1, ref|YP_002735152.1, ref|ZP_02708635.1, ref|ZP_02717846.1, tr|B1S1C0, tr|B2E015, tr|B8ZJK2, tr|C1CHA9 |
| 4.4e-019 | 2 | fig|453365.3.peg.1063 | Streptococcus pneumoniae CDC3059-06 | Phage transcriptional regulator, Cro/CI family | EDT96714.1, GO:0043565, SP305906_0058, emb|CAR67892.1, gb|ACO18865.1, gb|EDT50968.1, gb|EDT96714.1, gi|168483683, gi|168493703, gi|172042922, gi|183576186, gi|220673431, gi|221230971, gi|225723012, gi|225853640, gnl|md5|5851ddea4742ed53f11c53a2, img|642186037, img|642212719, kegg|sjj:SPJ_0036, kegg|sne:SPN23F_00310, ref|YP_002510123.1, ref|YP_002735152.1, ref|ZP_02708635.1, ref|ZP_02717846.1, tr|B1S1C0, tr|B2E015, tr|B8ZJK2, tr|C1CHA9 |