The SEED: an Annotation/Analysis Tool Provided by FIG
[ Essentiality Data | FIG Tutorials | Peer-to-peer Updates | Subsystem Update Queue | SEED Control Panel | PATRIC | SEED Wiki]
[RAST | GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt ]

SEED version cvs.1555556707 (Wed Apr 17 22:05:07 2019) on gum.mcs.anl.gov
The SEED

FIG search
PEGs that Might Be in Clusters
Sim. Sc. Cluster Size PEG Genome Function Aliases
2.4e-12 7 fig|176299.3.peg.4364 Agrobacterium tumefaciens str. C58 Pca operon transcriptional activator PcaQ GENE:pcaQ, GO:0003700, GO:0006350, GO:0006355, GO:0016563, GO:0019619, GO:0045941, GeneID:1136417, LocusTag:Atu4543, NP_535021.1, gb|AAA91130.1, gb|AAK88900.2, gi|1098676, gi|159141343, gi|159186209, gi|17938232, gi|61229771, gi|61229773, gnl|md5|274e67c5a1ff0653d52d9adb, img|639299861, kegg|atu:Atu4543, pcaQ, ref|NP_356115.2, sp|P0A4T6, sp|P0A4T7, sp|PCAQ_AGRT5, sp|PCAQ_AGRTU
1.1e-15 5 fig|48935.1.peg.1658 Novosphingobium aromaticivorans Gallic acid utilization transcriptional regulator, LysR family COG: COG0583, GO:0003700, GO:0006350, GO:0006355, Saro1500, ZP_00094484.1, cmr|NT01NA2960, gb|ABD27252.1, gi|23108252, gi|87136510, gi|87200829, gnl|md5|c1f1f590f5cbadf379a0f670, img|640445595, kegg|nar:Saro_2816, ref|YP_498086.1, tr|Q2G4H1
2.0e-014 5 fig|314232.3.peg.1702 Loktanella vestfoldensis SKA53 Pca operon transcriptional activator PcaQ gnl|md5|87482a05bdc86d62fec5b0fa
6.4e-13 5 fig|246200.3.peg.296 Silicibacter pomeroyi DSS-3 Pca operon transcriptional activator PcaQ GENE:pcaQ, GO:0003700, GO:0006350, GO:0006355, GO:0016563, GO:0019619, GO:0045941, GeneID:3196915, LocusTag:SPOA0047, YP_164878.1, cmr|SPO_A0047, gb|AAR21641.1, gb|AAV97187.1, gi|38490082, gi|56680522, gi|56708837, gnl|md5|240a1332dd8a4658542fb928, img|637613591, kegg|sil:SPOA0047, pcaQ, ref|YP_164878.1, tr|Q6SJC1
6.4e-13 4 fig|187410.1.peg.2073 Yersinia pestis KIM LysR family transcriptional regulator YnfL GO:0003700, GO:0006350, GO:0006355, GeneID:1147056, NP_669421.1, cmr|NT02YP2498, cmr|NT06YP1916, eric|BAL-0003006, eric|BAM-0002122, eric|BAN-0002048, eric|BAO-0003808, gb|AAM85672.1, gb|AE013813_8, gb|EDR52831.1, gb|EDR65909.1, gi|166208351, gi|166211171, gi|167056131, gi|167424944, gi|21958944, gi|22125998, gnl|md5|28cd3ac9cd1fc92495edafaa, img|637310553, img|641833248, img|641836195, kegg|ypk:y2109, ref|NP_669421.1, ref|ZP_02237206.1, ref|ZP_02316697.1, tr|B0H584, tr|B0HDH1, tr|Q8D0I1, y2109
4.0e-23 3 fig|208964.1.peg.2921 Pseudomonas aeruginosa PAO1 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:882626, NP_251611.1, PA2921, gb|AAG06309.1, gb|AE004718_6, gi|15598117, gi|9949015, gnl|md5|dee8964cc35858ce20a37b91, img|637053329, kegg|pae:PA2921, ref|NP_251611.1, tr|Q9HZS6
7.6e-22 3 fig|36873.1.peg.7725 Burkholderia xenovorans LB400 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, gb|ABE30021.1, gi|91686821, gi|91782867, gnl|md5|9568e2835163449599b3c775, img|637946683, kegg|bxe:Bxe_A2956, ref|YP_558073.1, tr|Q141G8
2.5e-17 3 fig|266779.1.peg.4274 Mesorhizobium sp. BNC1 Transcriptional regulator CDD:pfam00126, CDD:pfam02573, CDD:pfam03466, COG: COG0583, MBNC02004364, ZP_00192622.2, gi|45914262, gnl|md5|0784fd32515b9c14e6cc6e27
2.4e-15 3 fig|211586.1.peg.974 Shewanella oneidensis MR-1 Transcriptional regulator CidR, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:1168884, NP_716674.1, SO1046, cmr|SO_1046, gb|AAN54119.1, gb|AE015549_5, gi|24346668, gi|24372632, gnl|md5|3c187e5c5f65973866ea9a31, img|637343004, kegg|son:SO_1046, ref|NP_716674.1, tr|Q8EI07
2.0e-14 3 fig|243365.1.peg.1150 Chromobacterium violaceum ATCC 12472 Transcriptional regulator CidR, LysR family CV1150, GO:0003700, GO:0006350, GO:0006355, GeneID:2550309, NP_900820.1, cmr|NT01CV1143, gb|AAQ58825.1, gi|34102460, gi|34496605, gnl|md5|28310b55a2664479fc85c3e6, img|637451928, kegg|cvi:CV_1150, ref|NP_900820.1, tr|Q7NYX2
3.4e-14 3 fig|160492.1.peg.1528 Xylella fastidiosa 9a5c Hydrogen peroxide-inducible genes activator => OxyR CDD:pfam00126, COG:COG0583, GO:0003700, GO:0006350, GO:0006355, GeneID:1127078, NP_298821.1, XF1532, cmr|NT01XF1721, gb|AAF84341.1, gb|AE003983_3, gi|15838133, gi|9106570, gnl|md5|975790b4a08d15351a1253a1, img|637043990, kegg|xfa:XF1532, ref|NP_298821.1, tr|Q9PD47
2.2e-13 3 fig|190485.1.peg.828 Xanthomonas campestris pv. campestris ATCC 33913 Hydrogen peroxide-inducible genes activator => OxyR GO:0003700, GO:0006350, GO:0006355, GeneID:1001424, NP_636223.1, XCC0832, cmr|NT01XC1177, cmr|NT02XC3942, cmr|XCAORF_1017, emb|CAP52884.1, gb|AAM40147.1, gb|AAY50442.1, gi|167734674, gi|188992914, gi|21111855, gi|21230306, gi|66575032, gi|66769700, gnl|md5|b28a1646c6cd3c87f28de2c7, img|637272937, img|637658907, img|642630997, kegg|xca:xccb100_3519, kegg|xcb:XC_3398, kegg|xcc:XCC0832, oxyR, ref|NP_636223.1, ref|YP_001904924.1, ref|YP_244462.1, tr|B0RUE2, tr|Q4UR81, tr|Q8PCA2
2.4e-12 3 fig|354.1.peg.1241 Azotobacter vinelandii Transcriptional regulator, LysR family Avin3187, COG: COG0583, GO:0003700, GO:0006355, GO:0016563, GO:0019619, GO:0045941, ZP_00091484.1, gb|ACO79969.1, gi|226720798, gi|226945871, gi|23105026, gnl|md5|1e608636f0a09d94079d3a4b, img|638378870, kegg|avn:Avin_38270, ref|YP_002800944.1, tr|C1DSM6
3.2e-12 3 fig|321314.4.peg.4064 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Transcriptional regulator CidR, LysR family GENE:ywbI, GO:0003700, GO:0006350, GO:0006355, GeneID:3336695, LocusTag:SC4149, YP_219136.1, cmr|NT03ST4665, cmr|NT04ST4423, cmr|NT05SE4312, cmr|NT06SE4756, emb|CAD09254.1, emb|CAR35602.1, emb|CAR39881.1, emb|CAR62079.1, eric|ABS-0085903, eric|ABX-0114469, eric|ADA-0004082, eric|ADB-0004883, gb|AAO71640.1, gb|AAV79832.1, gb|AAX68055.1, gb|ABX70541.1, gb|ACF65081.1, gb|ACF67844.1, gb|ACF89298.1, gb|ACH51710.1, gb|ACH74915.1, gb|ACN48396.1, gb|EDY29357.1, gb|EDZ03201.1, gb|EDZ09210.1, gb|EDZ10895.1, gb|EDZ24146.1, gb|EDZ34629.1, gi|161366773, gi|161617409, gi|16505258, gi|167552285, gi|16762951, gi|168236971, gi|168243680, gi|168263396, gi|194404859, gi|194407625, gi|194446196, gi|194449321, gi|194710077, gi|194734575, gi|197096473, gi|197214313, gi|197250610, gi|197289998, gi|197364996, gi|197937582, gi|198243066, gi|199604656, gi|200387558, gi|204324015, gi|204927350, gi|205274821, gi|205323056, gi|205337382, gi|205347998, gi|205355040, gi|206711226, gi|207859423, gi|213161132, gi|213427246, gi|213647391, gi|213852755, gi|213980107, gi|214002550, gi|224470566, gi|224586038, gi|25327371, gi|29140076, gi|29144438, gi|56130326, gi|56416069, gi|62130352, gi|62182719, gnl|md5|49108ee856e1b9c7ace2772d, img|637219340, img|637407831, img|637604200, img|637643091, img|641325682, img|641863321, img|641875832, img|641884810, img|642114360, img|642124855, img|642128534, img|642136993, img|642143619, img|642149653, img|642173831, img|642178611, img|642739840, img|642744684, img|642749469, img|642773962, img|642778619, img|642787566, kegg|sea:SeAg_B4531, kegg|sec:SC4149, kegg|sed:SeD_A4666, kegg|see:SNSL254_A4616, kegg|seg:SG4114, kegg|seh:SeHA_C4614, kegg|sei:SPC_4334, kegg|sek:SSPA3795, kegg|set:SEN4040, kegg|sew:SeSA_A4523, kegg|spq:SPAB_05265, kegg|spt:SPA4087, kegg|stt:t4176, kegg|sty:STY4468, pir|, pir|AE1019, ref|NP_458568.1, ref|NP_807780.1, ref|YP_001591373.1, ref|YP_002043522.1, ref|YP_002048261.1, ref|YP_002117205.1, ref|YP_002144633.1, ref|YP_002149185.1, ref|YP_002218164.1, ref|YP_002228841.1, ref|YP_002246074.1, ref|YP_002639837.1, ref|YP_153144.1, ref|YP_219136.1, ref|ZP_02346038.1, ref|ZP_02662029.1, ref|ZP_02668612.1, ref|ZP_02685369.1, ref|ZP_03214170.1, ref|ZP_03218552.1, ref|ZP_03346842.1, ref|ZP_03359996.1, ref|ZP_03377444.1, ref|ZP_03382287.1, ref|ZP_03407366.1, ref|ZP_03413285.1, tr|A9N1Q9, tr|B4T1W6, tr|B4TEA9, tr|B4TRJ9, tr|B5BJZ2, tr|B5CDS1, tr|B5F2E6, tr|B5FRE7, tr|B5MPY2, tr|B5N8U7, tr|B5P6A0, tr|B5PY52, tr|B5Q4H8, tr|B5QZ94, tr|B5R934, tr|C0Q549, tr|Q57GV7, tr|Q5PIY8, tr|Q8Z1R4, ywbI
4.9e-29 2 fig|83333.1.peg.1328 Escherichia coli K12 Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate) GO:0003700, GO:0006350, GO:0006355, GeneID:945831, NP_415855.1, b1339, cmr|NT01EC1628, cmr|NT11EC1388, dbj|BAA14941.1, eric|ABE-0004496, eric|ADY-0001370, gb|AAC74421.1, gb|ACB02560.1, gb|ACR64304.1, gi|16129300, gi|169888853, gi|170081018, gi|1742206, gi|1787601, gi|238862306, gi|238900574, gi|3025116, gi|89108187, gnl|md5|810f731677eaf50e3b0ee7b3, img|637001330, img|637014702, img|641606965, kegg|ebw:BWG_1173, kegg|ecd:ECDH10B_1459, kegg|ecj:JW1333, kegg|eco:b1339, ref|AP_001967.1, ref|NP_415855.1, ref|YP_001730338.1, ref|YP_002926370.1, sp|ABGR_ECOLI, sp|P77744, tr|B1XCG8, tr|C4ZV87, ydaK
6.2e-24 2 fig|264198.3.peg.6196 Ralstonia eutropha JMP134 Transcriptional regulator NbaR, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:3614542, LocusTag:Reut_B5497, YP_299686.1, gb|AAZ64842.1, gi|72122656, gi|73539319, gnl|md5|b448d773fb3af2b515a967d4, img|637694922, kegg|reu:Reut_B5497, ref|YP_299686.1, tr|Q46PU2
8.7e-18 2 fig|224308.1.peg.3836 Bacillus subtilis subsp. subtilis str. 168 Transcriptional regulator CidR, LysR family Bsu3827, GO:0003700, GO:0006350, GO:0006355, GeneID:937626, NP_391710.1, cmr|NT01BS4844, emb|CAA51580.1, emb|CAB15857.1, gi|16080882, gi|221311797, gi|221316123, gi|221321034, gi|221325319, gi|2636366, gi|413948, gi|732339, gnl|md5|79537672a691517e88ae1b58, img|637034017, kegg|bsu:BSU38310, pathema|ntbs01.2.cds.ORF07040, ref|NP_391710.1, ref|ZP_03593644.1, ref|ZP_03597928.1, ref|ZP_03602328.1, ref|ZP_03606613.1, sp|P39592, sp|YWBI_BACSU, ywbI
2.4e-15 2 fig|224911.1.peg.6415 Bradyrhizobium japonicum USDA 110 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:1047610, NP_773055.1, bll6415, dbj|BAC51680.1, gi|27354694, gi|27381526, gnl|md5|314bd2d2d789e411e950e1ad, img|637374003, kegg|bja:bll6415, ref|NP_773055.1, tr|Q89GD0
9.0e-15 2 fig|216895.1.peg.2554 Vibrio vulnificus CMCP6 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:1179622, NP_761592.1, VV12777, cmr|NT01VV2703, gb|AAO11119.1, gb|AE016806_109, gi|27362264, gi|27366064, gnl|md5|4f98f8ab625c53b9f22b6018, img|637363065, kegg|vvu:VV1_2777, ref|NP_761592.1, tr|Q8D932
2.0e-14 2 fig|292459.1.peg.103 Symbiobacterium thermophilum IAM 14863 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, cmr|NT07ST0133, dbj|BAD39091.1, gi|51854933, gi|51891244, gnl|md5|6275ec7156e3b76eaba42bd0, img|637536574, kegg|sth:STH106, ref|YP_073935.1, tr|Q67TA2
9.9e-14 2 fig|261594.1.peg.3726 Bacillus anthracis str. 'Ames Ancestor' Transcriptional regulator CidR, LysR family GBAA3729, GO:0003700, GO:0006350, GO:0006355, GeneID:2818310, YP_020366.2, cmr|BA_3729, cmr|GBAA3729, cmr|NT02BT3664, cmr|NT04BT3609, cmr|NT05BA3624, gb|AAP27478.1, gb|AAT32841.2, gb|AAT55763.1, gb|AAT60522.1, gb|AAU16891.1, gb|ACK89784.1, gb|ACO27891.1, gb|ACP12537.1, gb|ACQ50788.1, gb|EDR18767.1, gb|EDR85948.1, gb|EDR91046.1, gb|EDS94838.1, gb|EDT17309.1, gb|EDT67155.1, gb|EDV18371.1, gb|EDX57104.1, gb|EDX63403.1, gb|EDX69238.1, gb|EEK55262.1, gb|EEK83059.1, gb|EEL15910.1, gb|EEL44451.1, gb|EEM21368.1, gb|EEM58858.1, gb|EEM76636.1, gb|EEM88576.1, gi|164713241, gi|165871030, gi|167510551, gi|167528269, gi|167636342, gi|167641469, gi|170125937, gi|170666535, gi|170689485, gi|170709134, gi|172082088, gi|177652414, gi|190564407, gi|190565090, gi|195993146, gi|196024731, gi|196030640, gi|196034072, gi|196038232, gi|196044696, gi|218537386, gi|218904801, gi|225787674, gi|225865651, gi|227002794, gi|227813502, gi|228597615, gi|228626312, gi|228660276, gi|228690674, gi|228772931, gi|228812531, gi|228831035, gi|228843498, gi|228916300, gi|228928716, gi|228947284, gi|228986759, gi|229092647, gi|229123183, gi|229157248, gi|229185903, gi|229269151, gi|229604743, gi|254686232, gi|254720859, gi|254738705, gi|254744737, gi|254753023, gi|254759294, gi|30258250, gi|30263615, gi|47551907, gi|47778202, gi|49180387, gi|49186460, gi|49329876, gi|49478320, gi|51975341, gi|52141872, gnl|md5|f77c3c5aeca4417879dbeae3, img|637303964, img|637506699, img|637514842, img|637547592, img|637790463, img|641795609, img|642035157, img|642057822, img|642070714, img|642075050, img|642338436, img|642369648, img|642375258, img|642413276, img|642432527, img|642461077, kegg|bah:BAMEG_0906, kegg|bai:BAA_3754, kegg|ban:BA3729, kegg|bar:GBAA3729, kegg|bat:BAS3457, kegg|bcu:BCAH820_3685, kegg|bcx:BCA_3767, kegg|bcz:BCZK3374, kegg|btk:BT9727_3423, pathema|gb6.2481.cds.GBAA3729, pathema|gba.6615.cds.ORF04075, pathema|ntba05.1.cds.ORF03574, pathema|ntbc02.1.cds.ORF03528, pathema|ntbt02.1.cds.ORF03549, pathema|ntbt04.1.cds.ORF03495, ref|NP_845992.1, ref|YP_002452635.1, ref|YP_002751029.1, ref|YP_002813511.1, ref|YP_002867855.1, ref|YP_020366.2, ref|YP_029712.1, ref|YP_037744.1, ref|YP_084958.1, ref|ZP_02215681.1, ref|ZP_02394643.1, ref|ZP_02399718.1, ref|ZP_02880674.1, ref|ZP_02899560.1, ref|ZP_02934881.1, ref|ZP_03018011.1, ref|ZP_03101482.1, ref|ZP_03105541.1, ref|ZP_03111931.1, ref|ZP_04079870.1, ref|ZP_04091752.1, ref|ZP_04109578.1, ref|ZP_04146888.1, ref|ZP_04223795.1, ref|ZP_04252389.1, ref|ZP_04285328.1, ref|ZP_04313076.1, ref|ZP_05150091.1, ref|ZP_05182650.1, ref|ZP_05196408.1, ref|ZP_05202415.1, ref|ZP_05205059.1, ref|ZP_05211320.1, tr|B0ASC7, tr|B0Q8R8, tr|B0QPE7, tr|B1F5V2, tr|B1GQ42, tr|B1URX3, tr|B3IYU8, tr|B3YTI7, tr|B3Z5E1, tr|B3ZNC0, tr|B7JIA3, tr|C1ENB0, tr|C2NL71, tr|C2QW66, tr|C2TJZ0, tr|C2VX30, tr|C3C5U2, tr|C3F530, tr|C3GMC5, tr|C3HM28, tr|C3L966, tr|C3P4N6, tr|Q637F9, tr|Q6HFD2, tr|Q81Y28
1.7e-13 2 fig|266835.1.peg.4756 Mesorhizobium loti MAFF303099 Transcriptional regulator, LysR family GO:0003700, GO:0006350, GO:0006355, GeneID:1229310, NP_106655.1, cmr|NT02ML5009, dbj|BAB52441.1, gi|13475091, gi|14025842, gnl|md5|308c16e1a3bb05b9802ce49d, img|637078122, kegg|mlo:mlr6097, mlr6097, ref|NP_106655.1, tr|Q98A96
6.4e-13 2 fig|243277.1.peg.1598 Vibrio cholerae O1 biovar eltor str. N16961 Cys regulon transcriptional activator CysB GO:0003700, GO:0006350, GO:0006355, GeneID:2613873, NP_231257.1, VC1617, cmr|VC_1617, gb|AAF94771.1, gb|ACP05870.1, gb|ACQ60923.1, gb|EAX57471.1, gb|EAY37103.1, gb|EAZ73916.1, gb|EAZ77497.1, gb|EEO08294.1, gb|EEO16396.1, gb|EEO19315.1, gi|121547355, gi|121590792, gi|124118360, gi|126511322, gi|126520274, gi|153223183, gi|153818136, gi|153822206, gi|15641625, gi|227009658, gi|227081770, gi|229343319, gi|229351455, gi|229354392, gi|229370500, gi|229508438, gi|229511490, gi|229518630, gi|229607845, gi|9656129, gnl|md5|f3557bea53932c20859402f5, img|637048094, img|640199055, img|640992549, img|641012804, img|641016978, kegg|vch:VC1617, kegg|vcj:VCD_002759, kegg|vcm:VCM66_1557, ref|NP_231257.1, ref|YP_002810321.1, ref|YP_002878493.1, ref|ZP_01678120.1, ref|ZP_01953705.1, ref|ZP_01970803.1, ref|ZP_01974873.1, ref|ZP_04397941.1, ref|ZP_04400969.1, ref|ZP_04408073.1, tr|A1F8E9, tr|A2PJY7, tr|A3GMJ9, tr|A3GZ92, tr|C2IKY7, tr|C2JI92, tr|C3LMU4, tr|C3NQ64, tr|Q9KRL9
8.4e-13 2 fig|195102.1.peg.796 Clostridium perfringens str. 13 probable transcriptional regulator CPE0733, GO:0003700, GO:0006350, GO:0006355, GeneID:988992, NP_561649.1, cmr|NT03CP0777, dbj|BAB80439.1, gi|18144393, gi|18309715, gnl|md5|435b1a02c2968129ab16eeed, img|637252087, kegg|cpe:CPE0733, pathema|ntcp03.3.cds.ORF00856, ref|NP_561649.1, tr|Q8XMF6
4.2e-12 2 fig|226186.1.peg.4597 Bacteroides thetaiotaomicron VPI-5482 Transcriptional regulator YeiE, LysR family BT4599, GO:0003700, GO:0006350, GO:0006355, GeneID:1072311, NP_813510.1, cmr|NT01BT4777, gb|AAO79704.1, gb|EES65738.1, gi|251837647, gi|253572747, gi|29341918, gi|29350007, gnl|md5|85fa464003d8e83f2222b882, img|637413085, kegg|bth:BT_4599, ref|NP_813510.1, ref|ZP_04850147.1, tr|C6ITU1, tr|Q89YY1

FIG search